Cruf016385.1
Basic Information
- Insect
- Chrysomya rufifacies
- Gene Symbol
- -
- Assembly
- GCA_014858695.1
- Location
- JACGTJ010045662.1:259-3656[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.054 3 8.5 0.2 3 23 252 273 251 273 0.98 2 11 0.1 5.8 7.6 0.6 1 23 305 328 305 328 0.94 3 11 0.63 34 5.1 0.1 3 23 391 412 390 412 0.96 4 11 0.98 54 4.5 0.5 3 23 446 467 445 467 0.92 5 11 1.3e-05 0.00071 19.9 0.7 3 23 478 498 477 498 0.97 6 11 9.4e-05 0.0052 17.2 1.4 1 23 509 532 509 532 0.91 7 11 0.00014 0.0078 16.6 2.3 3 23 540 560 539 560 0.97 8 11 0.0058 0.32 11.5 1.0 2 23 568 590 567 590 0.95 9 11 0.0017 0.093 13.2 0.6 1 23 598 621 598 621 0.93 10 11 0.00027 0.015 15.7 2.8 2 23 628 649 627 649 0.95 11 11 7.1e-07 3.9e-05 23.8 0.5 1 23 655 678 655 678 0.98
Sequence Information
- Coding Sequence
- ATGGATTTATGTTTATTGTGTTTGGAAAATAAAAAAGATAACTTGGAATCAATAGATTCCAGCTCTGCTCAATGGCAAAGTCTTAATATAAAAACAATTGTAGAGAGATATTTCTGGCCACTGGAAGAAGTGCCAAACAACAGTTGGATTTGTTTATCATGTTGGCAGCAACTATATGATTTTCATAATTTTCATATACGTATCGAAGAGGCTCATTTGAATTTTGATAAAATTAAGCTAGAAGTTATTGAAGCCGAGTTAAAGGACTCTTTAGATGATGTGAAAACAAAAGACGAAAATCAGGATGAAATAGTATGTGATAATCTTAAACAAGATAAGCAGAATTCCAGTATAGGTTCAGATGTTAAAGATGAGAATGTTTTATGTTTGGAAAATGCGATTGAAACTCCGTTCAGTATAGAGAGCAGTGAAATTAGTTTGTTTAAAAGAGATCCACTGGAAAAAGTACATTGTGTTAAGAATAGGAAAAGGAAACCAAATAAAGAATTCAAAACAAAAAACCAAACTGAAATATTAAACAAGCAGAATGTAGAGAGAAATACAGTACTGAAAACAGAAATAAAAGCTTTGACAAACAAGGACACAAAAACAATTGATTCCACAGATAATAATGAGTTCGAATACTCATCCAATGATGAGAATAAAAGCACCATAGAAAACTCAAAATTTGAAGAATTTCAAACTTGGCAAGAAAAAGACATATTTATAGGCCAACATTTTAAAAATATCCTATGCGATATCTGTCAAAAACCTATAGAAGATTTTAGCGTTTTGCAAAAACATTTCAAAACTGTTCACAATCGTCGCGGTTACGTTATTTGTTGTAAAAGAAAACTTTATTCACATGGCGTTGTAATAGATCACATACGTTGGCATGCTGATCCGGATTACTTTAAATGTTTAGAATGTGATAAAGTTATGCTCGATAGAAGAAATTTAAATATTCATAAACAAAATATGCATCGACAAAATGAAAGAACAAATGTTAATACAGATAATAATGATTCGGATTATACAACAAATGATGAGGATAACGCTAAAACTGGTAGTAACTCAAAGAAAAATATCTTAGATAATTCTAAATTCGATGAATTCTCAACGTGGCAAGAAAAAGATGATTTTATAGGAAGACATTTTAAAAACATTCTGTGTGATGTCTGTCAAACACCCGTTGAGAATTTTAGCGCTGTTAAAAAACATTTTCAAATGGTTCACAATCGCGGCGGTTACATAATATGCTGTAATCGAAGACTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGTTTAGAATGTGGTAAAGCTATGCTGGATCGTAGAAATTTAAAAATTCACAAACAAAATGTACATCGACATAAACGTACAATTGTTGTGCGACCATGTAAAATCTGTGGCAAATCCTTTGACAAGATAGATTTGTTGCGAAAACATAAATTGACACATACAGCTGAGGATGAAAATGGTGAGGGAAAGTATCCCTGTCAATTATGCGGTAAATTTTACCGTCAAGCTCATTTATTAAAAAGACACAACGATGTTGTTCATCTCAAGAAACATGCTAGGATCTGTGATATTTGTGGCAAAAGTTGCAGCACTACCACCGACTATAAAATGCATCGTAGAATACATGACACCAATCCAACTATCATCAAATGTGATGTATGTGGTATACGTCTTGTGAGTGAACGTAATCTTAAGATACATAAAAAACATCAACATCCCGAAGGTGGCCTACAAGAACATCCCTGTCCGCAGTGTGATAAAGTTGCACATACGGCTGTTGCTTTAAGGCGTCACATTTATTATATGCACGAAAATGGTGTCAATTGTAAATGTAATGTATGCGGTAAAACTTTTAAAAAAAGTAAAATACTTAGAGAACATATGGCGCTGCATACAGGCGATACTTTATATAAATGTCCATGGTGTCCGAAAACATTTAATTCCAGTGCCAATTTAGGTGTTCATCGTAGAAAATATCATTTGAAAGAATGGGAAGAAGATAAACTTAAAAGGCAAAACTTTTAA
- Protein Sequence
- MDLCLLCLENKKDNLESIDSSSAQWQSLNIKTIVERYFWPLEEVPNNSWICLSCWQQLYDFHNFHIRIEEAHLNFDKIKLEVIEAELKDSLDDVKTKDENQDEIVCDNLKQDKQNSSIGSDVKDENVLCLENAIETPFSIESSEISLFKRDPLEKVHCVKNRKRKPNKEFKTKNQTEILNKQNVERNTVLKTEIKALTNKDTKTIDSTDNNEFEYSSNDENKSTIENSKFEEFQTWQEKDIFIGQHFKNILCDICQKPIEDFSVLQKHFKTVHNRRGYVICCKRKLYSHGVVIDHIRWHADPDYFKCLECDKVMLDRRNLNIHKQNMHRQNERTNVNTDNNDSDYTTNDEDNAKTGSNSKKNILDNSKFDEFSTWQEKDDFIGRHFKNILCDVCQTPVENFSAVKKHFQMVHNRGGYIICCNRRLXXXXXXXXXXXXXXXXXXXXCLECGKAMLDRRNLKIHKQNVHRHKRTIVVRPCKICGKSFDKIDLLRKHKLTHTAEDENGEGKYPCQLCGKFYRQAHLLKRHNDVVHLKKHARICDICGKSCSTTTDYKMHRRIHDTNPTIIKCDVCGIRLVSERNLKIHKKHQHPEGGLQEHPCPQCDKVAHTAVALRRHIYYMHENGVNCKCNVCGKTFKKSKILREHMALHTGDTLYKCPWCPKTFNSSANLGVHRRKYHLKEWEEDKLKRQNF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -