Cruf011244.1
Basic Information
- Insect
- Chrysomya rufifacies
- Gene Symbol
- -
- Assembly
- GCA_014858695.1
- Location
- JACGTJ010004865.1:3765-7507[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0002 0.011 16.1 1.9 2 23 151 173 150 173 0.93 2 19 0.1 5.5 7.6 3.6 1 23 180 203 180 203 0.92 3 19 0.0091 0.5 10.9 2.8 1 20 208 227 208 227 0.96 4 19 0.00038 0.021 15.2 3.8 1 23 238 260 238 260 0.98 5 19 0.066 3.6 8.2 2.9 1 23 265 287 265 287 0.98 6 19 0.0064 0.35 11.4 0.2 3 23 295 315 293 315 0.96 7 19 0.023 1.3 9.6 0.6 2 23 321 342 320 342 0.95 8 19 0.27 15 6.3 2.5 1 23 381 404 381 404 0.93 9 19 0.0021 0.12 12.9 0.9 1 23 418 441 418 441 0.93 10 19 0.011 0.61 10.7 1.2 2 21 449 468 448 469 0.93 11 19 0.35 19 5.9 5.0 2 23 618 640 617 640 0.96 12 19 0.11 6.1 7.5 5.6 1 23 647 670 647 670 0.94 13 19 6.2 3.4e+02 2.0 4.2 1 20 675 694 675 694 0.94 14 19 0.00069 0.038 14.4 1.8 1 23 705 727 705 727 0.95 15 19 0.12 6.7 7.4 3.2 1 23 732 754 732 754 0.98 16 19 0.012 0.65 10.6 0.1 3 23 762 782 760 782 0.96 17 19 0.0074 0.41 11.2 0.9 2 23 788 809 787 809 0.96 18 19 0.00043 0.024 15.1 1.2 1 23 856 879 856 879 0.94 19 19 0.00022 0.012 16.0 0.4 2 23 887 909 886 909 0.91
Sequence Information
- Coding Sequence
- ATGTTATTGTATGAACTAACAAATAAATCTAGTTTATTACGCAGAAATGCTTATGAAGAAAAACTAGACAGCACTCATATTACTGTCGAAGAATATAAGCCTTTTACTCTTGAATATCTACAAAGTAATCCTTATGAGCTTACTTTTGAATTTACACCACGTGAACTAATATTAACGCTACTAGAGGGTATGCAAAACTATCCAGACTTATGGAAATACCATGAAGAAGCTTTCGACGAAGACTATAATAAGGCCATAGAAGATTTGTGTGAACTAATGTATGACAAATGGAGGCTGAGCATAAAACCTGTACAAATGAGTCGCAGCATTACACGTATCTTAAGATTTTATCGCTTTCTTTTTCCCTTTGATGTCATCGAAAAATTTACGGATTACTTTGATAAATGTGCAGCATTTTTACCTTCAGCTGTTGTTGAAATTCCTCATGTACGTTGTTTACAATGCTGGCGTTGTTTTAAACGTAATCGAGATTTAAAAAGTCATATGGCAGCTGAACATAGAACTTTGGCATGGCCTTATAAATGTCTTCATTGCCCCGAAAGCTTTATTACCCATAATGAGTTTGAGTTTCACAAACGTTTGCCACACTATTTGGACATATTTACTTGCAGAGAATGTAATATAAAATTTGATAGCCTATCGCATTACAATAAACATTATCCACATCAGAGACCAGACATGGAAAGCAGACACAAGTGTAACATTTGCCAGAAAAGTTTTAAAACTAAAAGAATATTACAACTGCACCTAGATACTCATAATGGTAAACGTTTTAGGTGTCATTTATGCCCTAGTGCTTATTATTGGAAAAGTAAACTTAATATGCATTTGAGAAAACATTTAAAGGAACGAGAAATAATATGTGAGGTATGCGCCAGAAGATTCTGGACAAACAAACAACTTAAAAATCATATGGATGTGCATACGGATCGTAAAATAACTTGTAATATATGCAATTTACAAATGAGAAAAGCTAGTTTAAATCGACATTTACGCACAATTCATGTGGTATATACGGGTACCATCGAAAGCAATTTTCGTGCCAAAGGTCATAGATTCCGAAGTGGTGGTATGCTTAAAGGACACAACGAAAACTATAACAAAAACCTAACACGTAATTATGATTGTAAAATCTGTAAAATTAAAATCTGCAGCTTAAAGGATCTTAAAGTGCATAACAAAGAATTTCATTACAAACATAAAACAAAAATTGTAAAGTTAACACGTGAATATGAGTGTAAAATGTGTAAAATTCAATTTGAACGCTTAAAAGATCTTAAAATACATAACAAAGAACTACATTTTGATATGGGTCTAAAGTTAAAGTGTAAAATGTGTGAATCAATATTTAAACAATTGCGTTATTTAAAGCGTCATTATAGCAAATTTTCCAATAAATCTAATCTAATTGAGTTACTTAAAAAGGAAACAAATAAAACTGATTATTTAGAAGATATTATTGTTGATGATGAGTATAAAACCTTAACACTGGAATGCTTACAACAAAATCCTCAGGAGCTTGCTTTTGAATTAACGCCAAATGAAATAATGTTAACATTGTTAGAAGGTATGCAAAGTTATCCAGTTTTATGGAAATACCATAAAGAGCCCTTCGATGAAGACTATAAAAAAGCCATTGAAAATTTGTGCCAACTAATGTATGATAAATGGATGCTAAACATAAAACCTCTACAAATGAGTCGCAGTATTACACGAATCTTAAGATTTTATCGTTATCTTTTTCCTTTCGATGTTATAGAAGAATTTACACATTATTTTGAAAAATGTGCAGCTTTTTTACCTTCGGCTGTTATTGAAATTCCGCATGTACGTTGTCCAAAATGTTGGTGTTGTTTTAAATGTGATCAAGATTTAGCAAGACATATGGCTACTGAACACAAAAAGATGGATTGGTTGCATAAATGTTTACATTGTTCCGAATGTTTTGCCACTAAGGAAGAGTTAGAGTTTCATAAACGTTTGCCACACTATTTGGAAGTTTTCACTTGCAGAGAGTGTAACCTAAAATTTGATTGCCTATCCCAATACAATAAACATTATCCCCATCAGAAATCAGATTCGGCTCATAGACATGTCTGCAAAATATGCCAGAAAAGCTATAAAACTAAAAGAGTATTACAGCTACACGAAGAAATTCACATGGGGAAACGTTTTAAGTGTCATTTATGTCCTAGTGCTTATTATTGGAAAAGTAAACTTAATATGCACTTAAAGAAACATTTACAGGATCGCGAAATTATTTGTGAGGTGTGCGCCAAAGGATTCTGGACAAACAAAGAACTTAAAACTCATATGGATATACATACAAACTTTAAAATTACCTGTAACATTTGTAATCTGCAAATGAGAAAATCTAGTTTAAATCGACATTTGCGCACAGTTCATGTGGTCTTTGCGGGAACTATTGAGAGTAATTTTAGAGCCAAAGGTTATAGATTTAGAAGTGGCATGTATAAAGGACTGCCCAATTTTAAACCTAGAAAAAAACGTAGCGAAAGGCTGAGTAAGAAATTAATACGTGATTATGAGTGTAAAATCTGTAAAATAAGATTTGATCGTTTGAAGGATCTTAAAACACATAACAAAGAATTGCATTTCGATATGGGACCGAAGTTACCATGTAAAATGTGCGATGCTATATTCACACAACAACGTTATCTGAAGCGTCATTATGGTGTTAAACACAAATTGCCGGACTTTCAAATTTATGCTATTATTACGAGAGGAATGGAGGTCAATAATGCTTTGGCTATTACATCGGCAGAGGAATTGAAACAAATTATACAGAATATTAAATAA
- Protein Sequence
- MLLYELTNKSSLLRRNAYEEKLDSTHITVEEYKPFTLEYLQSNPYELTFEFTPRELILTLLEGMQNYPDLWKYHEEAFDEDYNKAIEDLCELMYDKWRLSIKPVQMSRSITRILRFYRFLFPFDVIEKFTDYFDKCAAFLPSAVVEIPHVRCLQCWRCFKRNRDLKSHMAAEHRTLAWPYKCLHCPESFITHNEFEFHKRLPHYLDIFTCRECNIKFDSLSHYNKHYPHQRPDMESRHKCNICQKSFKTKRILQLHLDTHNGKRFRCHLCPSAYYWKSKLNMHLRKHLKEREIICEVCARRFWTNKQLKNHMDVHTDRKITCNICNLQMRKASLNRHLRTIHVVYTGTIESNFRAKGHRFRSGGMLKGHNENYNKNLTRNYDCKICKIKICSLKDLKVHNKEFHYKHKTKIVKLTREYECKMCKIQFERLKDLKIHNKELHFDMGLKLKCKMCESIFKQLRYLKRHYSKFSNKSNLIELLKKETNKTDYLEDIIVDDEYKTLTLECLQQNPQELAFELTPNEIMLTLLEGMQSYPVLWKYHKEPFDEDYKKAIENLCQLMYDKWMLNIKPLQMSRSITRILRFYRYLFPFDVIEEFTHYFEKCAAFLPSAVIEIPHVRCPKCWCCFKCDQDLARHMATEHKKMDWLHKCLHCSECFATKEELEFHKRLPHYLEVFTCRECNLKFDCLSQYNKHYPHQKSDSAHRHVCKICQKSYKTKRVLQLHEEIHMGKRFKCHLCPSAYYWKSKLNMHLKKHLQDREIICEVCAKGFWTNKELKTHMDIHTNFKITCNICNLQMRKSSLNRHLRTVHVVFAGTIESNFRAKGYRFRSGMYKGLPNFKPRKKRSERLSKKLIRDYECKICKIRFDRLKDLKTHNKELHFDMGPKLPCKMCDAIFTQQRYLKRHYGVKHKLPDFQIYAIITRGMEVNNALAITSAEELKQIIQNIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -