Basic Information

Insect: Chrysomya rufifacies
Gene Symbol: -
Assembly: GCA_014858695.1
Location: JACGTJ010012064.1:264-10984[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.036 2 9.0 1.0 2 23 277 299 276 299 0.96

2 10 1.6 86 3.9 0.9 6 23 308 325 308 325 0.97

3 10 8.4e-08 4.6e-06 26.8 0.5 1 23 331 353 331 353 0.98

4 10 1.1e-06 6e-05 23.3 0.2 2 23 361 382 361 382 0.98

5 10 0.00026 0.014 15.8 0.5 1 23 389 412 389 412 0.90

6 10 0.011 0.62 10.6 0.5 3 23 420 440 418 440 0.97

7 10 0.026 1.4 9.5 0.2 2 23 448 470 447 470 0.95

8 10 0.00062 0.034 14.6 2.2 1 23 478 501 478 501 0.97

9 10 1.7e-06 9.4e-05 22.6 0.2 1 23 507 529 507 529 0.99

10 10 2e-05 0.0011 19.3 0.7 1 23 535 558 535 558 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.036	2	9.0	1.0	2	23	277	299	276	299	0.96
2	10	1.6	86	3.9	0.9	6	23	308	325	308	325	0.97
3	10	8.4e-08	4.6e-06	26.8	0.5	1	23	331	353	331	353	0.98
4	10	1.1e-06	6e-05	23.3	0.2	2	23	361	382	361	382	0.98
5	10	0.00026	0.014	15.8	0.5	1	23	389	412	389	412	0.90
6	10	0.011	0.62	10.6	0.5	3	23	420	440	418	440	0.97
7	10	0.026	1.4	9.5	0.2	2	23	448	470	447	470	0.95
8	10	0.00062	0.034	14.6	2.2	1	23	478	501	478	501	0.97
9	10	1.7e-06	9.4e-05	22.6	0.2	1	23	507	529	507	529	0.99
10	10	2e-05	0.0011	19.3	0.7	1	23	535	558	535	558	0.96

Sequence Information

Coding Sequence: ATGGAACAATGTTTACTATGTTTAGAGATAGCTAAAGAAGCCGATGACTGTATACAAGTTAATTCAGAAAAATGGAATCAACAGGAAATAAAATATCTAATCGAAAAACATTTATGGCCGATGGATAACATAACACTCGCCTCTTGGATGTGTTTGGAATGTGCAGGAGAACTACAAGATTTCCATAAATTCTATGTGCGCATAGAATTAGCACACAAAAATTTAGCTGCTTTGGTGAAAACAGAAGATGAAAAGGATAGCGAAAGTAATTATGATTATCAAGGTATAAGTGAGAGTCACGCAGAGCCAGAAATAATTATGGAACAACCAATACCAGCAGAATTTAATATAGATGCTGTAGCAGATATAAAAACTGAAATTATGGAAGATATGGACTCTGATGATGTTCCTTTGAAGTTTTCTCTAAAAAAGTGTCAAACAAAAGATTCATTAGAAGAAGCTTCAGAAGATCCAATTAAAGACCCTTTGGAGAAGACTAACAAAACAAAACAAAGTAAAATTTTGATGAATAAAGTTAAAAAGAAACTTAAATTAAAATCAAGAAAATCAAATTGTAATAGAAAAAATAAAACCGAATCTAATCAAGAAGACAATAGCACAGAAAAAACAGAAACCGAACCCTTAGAAACAAAAACGGAATTGAACGATATAAATGCTAACAACAAAGATGATGAAGATGAAGAGGATGCTGATAGTGTTAAAAGTGCTACAAAGAAACCGCGTAAAACTAACACAAAACAACGTAATAATCCCGATGCTGAAACTCTTAAGGAGTATGATCGTATTATTAAGGAAAACTTTCAAATTGAATGTCATCTTTGTCAGATTTCACTTGAAAATTTTATAACACTTCGTAAACATTTCCGTGTAGAACACAAACAACGTGGCTATGCCCGTTGTTGTAATAGAAATTTCTTTTCACGTTCAGTACTTGTCGATCATATACATTTGCATATGAATCCCAATCATTTCAAGTGTCAGGATTGTGGTAAAGTATTTTCCGATCGCAGTACATTAGTTGGTCATATGAAATTACATGATGATATAAGTAAATTGGAGAAATGTACAGAATGTGGTAAAGTGTTTGTGAGCATTGCAAAATTGAAGGCTCACATGCTGACGCATTTGTCAACGGAAAAAATGTTTCCCTGCACAATTTGTGGAAAATTCTTTACAAACACTTCCATTCTAAACCATCACGTAGAGGCTGTACATGAAAATAAATTTGTTCAAATCTGTAACATTTGTGGCAAATCAATACGTTGCCCCACCGCCTTTGCCAGTCATATGGAGACGCATGAACTGAAAGCTACACCATTAAGTTGTGATGTTTGCGGTCTATTGTTGGCCAATAAAATGGGTCTTAAACGTCATAAGAATTCTCAACATCCTGAGGGTGGTAAGAAGGAACATAAATGTCATATATGCTCGAAAATATCACCAACTTTAAGGGCTCTGAAATCGCATATACAAAGGGCACATGAAATGGGTTACGATTATAAATGTACCTTGTGCGAGAAGGCTTTTAAAAGACCAGCTGTTCTAAAGGAACATATGGCTACACATACGGGTACTGCTTTATATAGTTGTCCATTTTGTCCGAAAACCTTTATATCGAATGGCAATATGTATAATCATCGTAAAAATGCCCATCCTATTGAATGGGCTGAACTACAACGTCAAAAATATGCAGACGGTTAA
Protein Sequence: MEQCLLCLEIAKEADDCIQVNSEKWNQQEIKYLIEKHLWPMDNITLASWMCLECAGELQDFHKFYVRIELAHKNLAALVKTEDEKDSESNYDYQGISESHAEPEIIMEQPIPAEFNIDAVADIKTEIMEDMDSDDVPLKFSLKKCQTKDSLEEASEDPIKDPLEKTNKTKQSKILMNKVKKKLKLKSRKSNCNRKNKTESNQEDNSTEKTETEPLETKTELNDINANNKDDEDEEDADSVKSATKKPRKTNTKQRNNPDAETLKEYDRIIKENFQIECHLCQISLENFITLRKHFRVEHKQRGYARCCNRNFFSRSVLVDHIHLHMNPNHFKCQDCGKVFSDRSTLVGHMKLHDDISKLEKCTECGKVFVSIAKLKAHMLTHLSTEKMFPCTICGKFFTNTSILNHHVEAVHENKFVQICNICGKSIRCPTAFASHMETHELKATPLSCDVCGLLLANKMGLKRHKNSQHPEGGKKEHKCHICSKISPTLRALKSHIQRAHEMGYDYKCTLCEKAFKRPAVLKEHMATHTGTALYSCPFCPKTFISNGNMYNHRKNAHPIEWAELQRQKYADG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -