Cruf013520.1
Basic Information
- Insect
- Chrysomya rufifacies
- Gene Symbol
- -
- Assembly
- GCA_014858695.1
- Location
- JACGTJ010064338.1:392-2687[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0013 0.069 13.6 0.7 2 23 253 275 252 275 0.95 2 10 0.0076 0.42 11.2 0.4 6 23 284 301 279 301 0.98 3 10 7.5e-05 0.0041 17.5 6.1 1 23 307 330 307 330 0.97 4 10 6.5e-06 0.00036 20.8 5.1 1 23 336 358 336 358 0.99 5 10 0.00012 0.0066 16.8 0.1 1 23 365 388 365 388 0.97 6 10 0.0014 0.076 13.5 0.1 2 23 393 415 393 415 0.93 7 10 6.4e-05 0.0035 17.7 0.3 1 23 424 447 424 447 0.91 8 10 0.00051 0.028 14.9 0.0 1 23 454 477 454 477 0.96 9 10 6.5e-07 3.6e-05 24.0 1.5 1 23 483 505 483 505 0.98 10 10 0.00041 0.023 15.1 5.5 1 23 511 534 511 534 0.98
Sequence Information
- Coding Sequence
- ATGACAAAAATGTCTATAAAATTATGCTGTTGCTTGTGTTTTACACCCTGTATCGAATATCAACCATTACAAAATGATTCTGGTGAATGTAATGAATTTTATGAAATAACTATTAAATATTTTGATCCAACAATGTTAGTTACAGAAAATATTAATAGTATGCCCCAGGAAACAACAGAAGAAAGTCGTGTACTTTGCCAGGATTGTTGGTTACATATAAAGGATTTTGATGATTTCCATCAAACAGTACTCAATTCCAGATTAACATTCCGTGATTGTAATAATGAACAGAAATCACAATTGGAAATAAAACTTGAGCCAGAAGAGGAGATACCAGTAGATATAAATTATAAATACGAAGGTTATTCGGTTAAGGAAGGCGAGGAAACAGATAATAGGGATGATCCTGAAAATGAATTAAATCCCATAGATGAAGATTACAGAGGTAATACAGATGATGAGTGCGAGAATGATGATGATGATGACCCTGATGAGAAACCTTTAATAGAATTAAAAAGAAAACAAAAAATTAAAGAAAATAAAAAGAATAATGAACAAGACAACGAAGAAAATAAGCAAGAAGAAGATGCTAAACCACGACGTAAACGTAAACCTCGAGGTCCTAACAAAGATAATAGCAAATTATCGAAAAATGAAGAAAACCCCGTAGAACAGAAAAACAAATACCTTTCCAAAGAAGGCCAAGAAAAGGCAAAAGCAGCTAATGCTTTTATAGCAGAATGGAAATCTACGTTAGAGTGTGATATTTGTAAGGAAACCTTCGCCATGCATGATATGTTAAATGTTCATTTTAAAAAGATACATAATACCCGCTGTTATGTTGTCTGTTGTGAACGTAAATTTTATCGTCGTGCCGATTTAGTAGATCACATACGTGTACACATTGATCCTGAGACCCACAAATGTGATATATGTGGTAAACGAACTTCCAATAAACATTACCTTAAAATGCATAAGAAAACTGTTCATGGAGGAGAACATAATTATGAATGTCAAGAATGTCATAAAACTTTTGCACAAAAATGTAATTTGGATCGTCATTTACTTACACATGTTACCGGCAGTAAAGATTTTAAATGTGAAATATGTGGCAGGGCTTATGTCCTAGAGATACAGCTTAAATCACATATAAAACTAGTGCACAGTGATAATCGGGTATGTGATCAATGTGGTAAAACCTTGCCCAGTCCAGGTGCTCTTAAATATCATGTGAAAGATCAACATGACCCCACCATAGAAAAACGTACATTCCCTTGTGATGAATGTGGTACTGTACTGAAATCAAGTACTAATTTGAAAAAGCATAAAGCTGCCTATCATACGGATGGTACTACTGTTTATGTTTGCAGTATATGTGGTAAAGTTGCTGCTAGCGAAAGAGGTCTTATAAATCATAGAAAATATGTACACGAAAAGGAACGGATACATAAATGTAGTTATTGTGATAAAGCATTTAAACGTCCCAAAACTTTAGTTGAACATATAGCCACACATACCGGTGAGGACTTGTATCAATGTCCTCACTGCCCGCGTACATTTAAAATTAGCTCTAAGTATCATGAACATCGTAAAAAAGTTCATCCTGTGGAATGGGAAGAAAATCGTAAGAATCGTTTAGAAAAACAAAAAATCGATTTCGATAAAGTTAAAACACAAATTACACTTTAA
- Protein Sequence
- MTKMSIKLCCCLCFTPCIEYQPLQNDSGECNEFYEITIKYFDPTMLVTENINSMPQETTEESRVLCQDCWLHIKDFDDFHQTVLNSRLTFRDCNNEQKSQLEIKLEPEEEIPVDINYKYEGYSVKEGEETDNRDDPENELNPIDEDYRGNTDDECENDDDDDPDEKPLIELKRKQKIKENKKNNEQDNEENKQEEDAKPRRKRKPRGPNKDNSKLSKNEENPVEQKNKYLSKEGQEKAKAANAFIAEWKSTLECDICKETFAMHDMLNVHFKKIHNTRCYVVCCERKFYRRADLVDHIRVHIDPETHKCDICGKRTSNKHYLKMHKKTVHGGEHNYECQECHKTFAQKCNLDRHLLTHVTGSKDFKCEICGRAYVLEIQLKSHIKLVHSDNRVCDQCGKTLPSPGALKYHVKDQHDPTIEKRTFPCDECGTVLKSSTNLKKHKAAYHTDGTTVYVCSICGKVAASERGLINHRKYVHEKERIHKCSYCDKAFKRPKTLVEHIATHTGEDLYQCPHCPRTFKISSKYHEHRKKVHPVEWEENRKNRLEKQKIDFDKVKTQITL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -