Cruf003537.1
Basic Information
- Insect
- Chrysomya rufifacies
- Gene Symbol
- ham
- Assembly
- GCA_014858695.1
- Location
- JACGTJ010001499.1:538-21867[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.059 3.3 8.4 0.1 2 23 294 316 293 317 0.87 2 9 0.095 5.2 7.7 4.6 1 23 323 346 323 346 0.92 3 9 1.6e-07 8.6e-06 25.9 3.3 1 23 352 374 352 375 0.96 4 9 1.8e-06 0.0001 22.5 1.7 1 23 381 403 381 403 0.95 5 9 2.2e-05 0.0012 19.2 4.9 1 23 409 431 409 431 0.99 6 9 0.00031 0.017 15.5 1.1 2 21 439 458 438 459 0.95 7 9 7.3e-09 4e-07 30.1 1.3 1 23 906 928 906 928 0.99 8 9 3.8e-07 2.1e-05 24.7 0.9 1 23 934 957 934 957 0.97 9 9 2.2e-05 0.0012 19.1 4.4 1 23 963 985 963 985 0.98
Sequence Information
- Coding Sequence
- ATGATGAGGTCTAAGCTATTGCCAAGAAAATTAAATCAATGCAGCACAGGTGAAGATTACGAATTCGGTGGTGCATTCAAACAATACCCCAACAATTTAGCCTCTCCCGACTCCACCAACACTCTAAGATTAACAACCAATACAACAGACCTAAGCAATTATCAACATAATAGTCAACGTCATAACGGTTATAGTCAAAATAGTTCACCTAATCGTTCATTAGGTTTTGACGCTACAACACTGGTCAATAATCTGCCACAATCACCAGCCCATATGGAACATTTATTTAGTAGTAAATTACAAGCCGAAAGGCTATTACTCGAACTGATACGAGTACCAGAAACTATCTGTGATTTAAAAACGTCGATAAATGAAACGACGGGTGTTTATGCTAGGCAACATATTAGAAGGGGTACAAGATTTGGTCCGTTTGCTATAACGGAAACAACGGAAAAATCAAATGCTTGGGATATTTTACCCATTTCTCATATACGTAGCTTTCTAGAACCCTCACCCGAAGTTAAAAATCTATTAAAGAAAATCCGCACTACATCTTCATTAGATTGTGATAAAGAGGCTAATTTTAATCATTTCTATGTTGCGGGATGTCTTTGGTATGAATCCAATTGTGATATTGAAGCTGACGAAGAAATTATAATTGATGGTCGGCCCAAGAATTTATATGAACACAATGAGTTAATGGCAAATGGTGAAATGCACAATGGTTCCTCAATACATAGCAGTGATGATAGAAGTGAAAGGGATAATGCCTCATTTTACGGTTCCAATTTAAATCGTGACGACGACTATAAAAAAGACAAATCCTCATCGGAACAATTAAAAAGTGAATTGAGTGATGATGAAAACGGTTTCGATATACGTTGTGAAGTTTGCGATAAAACCTTTATTGAATTAGAAGTACTTGACGATCATTTGGTGGTAAATCATCATTTTCGTAAAGACGAATTCTTTTGTGAATTGTGTTCTCAGCGCTTTTGTCATCGTCCTTTATTATTGAAACATAGAGCTTTACAACATAACGAAATACGAAAATATCCTTGTGAAAATTGTACTAAGGTATTTTGTGATCCCTCAAATTTACAGCGACATATTCGTAACCACCACATTGGAGCCAGAAGTCACGCTTGCCCTGAGTGCGGTAAAACATTTGCTACCTCATCAGGCCTTAAACAGCACACGCATATACATTCCTCCGTTAAGCCCTTCCAGTGTGAGGTGTGTTTCAAAGCATATACACAATTTTCTAACTTGTGCCGCCATCGACGTATGCATGCTGATTGTCGCATGCAGATAAAGTGTAGCAAGTGTGGTCAGAGTTTTAGTACGGTTACTTCTTTGTCGAAACATAAAAGATTTTGTGATTCAACTAGTGTAACACCAGCCGGTGTGGGTTTGCCACCAAATCTTCAACATCCTCTACATCATCAACCACCAACACAAACATCTCCTCAAACAAGAAATTCTGCTGTTAACGGTTCATTACCGAACAATATGACTACACCACCGAATCCTTTTCTATTCTTTCGTTCCCCATTCTTTCCTGCATTTCCGCCGGCGGCTGCTGCTTTCGGTTTGCAGGGTATGTTTCCACAAGCTGCTGCCTCTCAAGCCGCCAATTTTCCACCTATGTTTTCAAAACCAAGTATGGACTTTAAAATGCAACAGTTGAGAAATCAAGCACCACCAGCTGGCAACAACTTACATCAGCTTAATAATAATATCAAAAATAATTCCTTAAATCCTGTTAACACCAAAGAAGATGTAAATCCAGCTACTGCTGCTGCAGCTGTACAAGAAACATTTGGTTTATATTTTCCTAAATTTGAAATGGAACAAAAACTTAAATCGGATCTTAACTATAAGATTAAAAGGGAAATGTCTCCTTCGGAAAATCATGTAAAAAATCATAAAAGAGATTCTTCTTCACAACGTTTTACCTCCGATGAGGAATCTTTGGAGGCCAAAGAAAGAGTTAAAGTGGAAATAAAAAAAGAAGCGGAATCCGCTAAGAAGCTAAGAAATGAAGAGGAAGAAGATAATTCCCAAAAACTCAATGATGATGATAAGAAATCCATTGATATTGTCTCGGTTTCACCACGTCACGAGCCCGAAGCTAAAAGCTCTTATACCGAACTGCCTTTGGATTTAAGTGTTTCACGTAAACGCAATAGCATTGATTCAAATTTTAGTGTAGAAGAGCGTAAATCGTCCAGAGATGATAACAACTCTTCTTCAATAAATCTCCGGGAAATTAGTCCTATTGCTCACGAAGAACTCAGCAATGCTGAAAGCTACGAACAACCCATGAAAAAACCTAGAATATTTAATTCTTCATTAAATAGCAGTCGTACACCTACAGCCTCACCAGGTCCCACACCTTCACCCTCACCACCCTGTAATGTTAGTACCACAGCTGGTATTGAGAATAATACCAATTCTAATCTGCCCACATGTCCTCGGCCCATACATCCTATGCTATTGGATGAAATCTATCGCTCACATGCATTGGAAACACAATTTCCACGTCCGCCGTTTCCTTTTTTAGGACTAATGGGCGAACGGCCGTCACTGGAAGCCAATGCATTACGCGCTAGAGAAGAACAATTTGCGGCCGAGCCCATGTTTCACGAGGCTTTAAGAAATCTTTCATCCGGTGCTTTACAAGTAGCAGCAGCTGGTAAATTAAAAGATCGTTATACTTGTAAATTTTGTGGTAAAGTTTTCCCCAGATCGGCTAATTTGACACGTCATTTAAGAACTCATACGGGGGAACAGCCTTATACCTGCAAATATTGTGATCGCGCATTTAGCATTTCCTCAAATTTACAAAGACATGTACGCAACATACACAACAAGGAAAGACCATTCAGATGTAATTTATGTGATCGCTGTTTTGGACAACAAACTAATTTGGATCGTCATCTCAAGAAGCATGAATCGGATACCTCGGGTTTAGGTTTGGCTATTAGTGATTCTCCCAGCTCCAATGAGGCTGATCGTGAGGATTCTTATTTTGATGAAATACGTAATTTTATGGATCGTGTTACTTATAATGAGGATCTTTATACCCCTTCTAGTATAGGTAATGCTGAAAATGACACCGATTACAATGCTAGTGACAACGAATTGTCAGTTTCAAGACCCTCTTCAACAGATTTGACTAATGATCATAATAAAGCTACAGATGCTAATGAAATATTAGAAGATGATTAA
- Protein Sequence
- MMRSKLLPRKLNQCSTGEDYEFGGAFKQYPNNLASPDSTNTLRLTTNTTDLSNYQHNSQRHNGYSQNSSPNRSLGFDATTLVNNLPQSPAHMEHLFSSKLQAERLLLELIRVPETICDLKTSINETTGVYARQHIRRGTRFGPFAITETTEKSNAWDILPISHIRSFLEPSPEVKNLLKKIRTTSSLDCDKEANFNHFYVAGCLWYESNCDIEADEEIIIDGRPKNLYEHNELMANGEMHNGSSIHSSDDRSERDNASFYGSNLNRDDDYKKDKSSSEQLKSELSDDENGFDIRCEVCDKTFIELEVLDDHLVVNHHFRKDEFFCELCSQRFCHRPLLLKHRALQHNEIRKYPCENCTKVFCDPSNLQRHIRNHHIGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCEVCFKAYTQFSNLCRHRRMHADCRMQIKCSKCGQSFSTVTSLSKHKRFCDSTSVTPAGVGLPPNLQHPLHHQPPTQTSPQTRNSAVNGSLPNNMTTPPNPFLFFRSPFFPAFPPAAAAFGLQGMFPQAAASQAANFPPMFSKPSMDFKMQQLRNQAPPAGNNLHQLNNNIKNNSLNPVNTKEDVNPATAAAAVQETFGLYFPKFEMEQKLKSDLNYKIKREMSPSENHVKNHKRDSSSQRFTSDEESLEAKERVKVEIKKEAESAKKLRNEEEEDNSQKLNDDDKKSIDIVSVSPRHEPEAKSSYTELPLDLSVSRKRNSIDSNFSVEERKSSRDDNNSSSINLREISPIAHEELSNAESYEQPMKKPRIFNSSLNSSRTPTASPGPTPSPSPPCNVSTTAGIENNTNSNLPTCPRPIHPMLLDEIYRSHALETQFPRPPFPFLGLMGERPSLEANALRAREEQFAAEPMFHEALRNLSSGALQVAAAGKLKDRYTCKFCGKVFPRSANLTRHLRTHTGEQPYTCKYCDRAFSISSNLQRHVRNIHNKERPFRCNLCDRCFGQQTNLDRHLKKHESDTSGLGLAISDSPSSNEADREDSYFDEIRNFMDRVTYNEDLYTPSSIGNAENDTDYNASDNELSVSRPSSTDLTNDHNKATDANEILEDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01261212; iTF_01259389;
- 90% Identity
- -
- 80% Identity
- -