Cruf007129.1
Basic Information
- Insect
- Chrysomya rufifacies
- Gene Symbol
- -
- Assembly
- GCA_014858695.1
- Location
- JACGTJ010029446.1:1-5418[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0053 0.29 11.7 2.8 1 23 150 173 150 173 0.93 2 22 2.2 1.2e+02 3.4 3.1 1 15 217 231 217 240 0.79 3 22 4.7 2.6e+02 2.4 8.6 1 23 246 269 246 269 0.97 4 22 0.00082 0.045 14.2 0.3 2 23 300 321 299 321 0.96 5 22 7.9 4.4e+02 1.7 3.6 1 23 397 420 397 420 0.90 6 22 3.7 2e+02 2.7 2.4 2 23 428 449 427 449 0.96 7 22 0.0026 0.14 12.6 0.6 2 19 458 475 457 475 0.95 8 22 0.82 45 4.8 2.0 2 20 513 531 512 534 0.93 9 22 0.0022 0.12 12.8 1.3 1 23 608 631 608 631 0.97 10 22 0.003 0.16 12.5 0.6 1 21 638 658 638 659 0.94 11 22 0.017 0.94 10.1 0.7 2 23 671 693 670 693 0.96 12 22 0.034 1.9 9.1 1.8 1 23 716 738 716 738 0.97 13 22 0.00047 0.026 15.0 0.2 3 19 766 782 764 784 0.94 14 22 3.1e-05 0.0017 18.7 1.6 1 23 831 854 831 854 0.97 15 22 2 1.1e+02 3.5 2.8 1 19 891 909 891 914 0.88 16 22 6.4e-05 0.0035 17.7 1.5 3 23 948 968 947 968 0.98 17 22 2.9e-06 0.00016 21.9 0.4 1 23 984 1006 984 1006 0.97 18 22 0.025 1.4 9.5 1.4 1 21 1012 1032 1012 1036 0.90 19 22 5.7e-06 0.00031 21.0 2.1 1 23 1065 1087 1065 1087 0.99 20 22 0.0002 0.011 16.1 1.5 1 23 1093 1115 1093 1115 0.98 21 22 1.5e-06 8.1e-05 22.8 1.0 1 23 1121 1143 1121 1143 0.99 22 22 0.073 4 8.1 3.4 1 19 1149 1167 1149 1173 0.94
Sequence Information
- Coding Sequence
- ATGAATGAACTTGCAAAATCGTATGATTTTATATTACAAGTTAAAAATGTAAATAATAAATACATGGAATTATTAGGAATGACTAAAGATCATCCAGCAGAACAAACAGTAAATAATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTAAATAATATAGAATCCAATGAACAGATTTTGAGTGAATCTGATAATACTATGTCCATGGAAGAATTTATATCAGAAGTTAAAACAGAAGCAGAAGAATTAACTCCATACGATATCGTTTTAAGTAAAAACTTTGAAGATGATCATGAAACCTGTGAAGAAAACGTTGAGAAAACTTCAATGCATCTACATGATCAAAACAGCTATTCATCTTCCCATGAAAATGGTATGTGGTCATTATATAGGAAAATCAGAAAAATCAATAAAAACTTTGTATGTCCAAAATGTAAGAAGAAATTTAAAAGTTCAACAGCTTGTCGCCAACATTTGGACATTATACATTCTCTAGAATCTAGTGATCATACGAGCAATTCATCATCCGAGGAGGAGGAGTCTGATAATTTACCAGAAGAAGATAATCCAACTGATGATACGTTCGATTCTGATAAAATTCAAAAGATTGGTAATTATTATGTATGTCCTATATGTAAAGGCAAATTTAAATCAAAAACAAGTTGTCGCTTTCATATAAGTTCATTGCATTTAAAACCGCAAAAATTTACTTGCTCATTCTGCTATAAAACATTTAAATGTAGAAACTATTTTGGCAGGCACCTTAAACGTAAACATCCAAGAGAATCAATTATTTCAAATACTAAACAAATTCAATTTTTATTTGGAAATCGTTTATACAGTAAACCCTCAGCTTGGCTTAAAGTTGAATGTAATTTGTGTTTAATCACATTTTCTACAACTAAAGAACTGCGTAAGCATTTAGAAATTCATAATGATGCAAAAACTCTTGAACACTTAAAATTAAGCGATGGAATTGTTAAACAATTCTTTTCAAATATTAACAATTTGGAAATTGTTAAGAAAACTATTGTAGAGGATATATTAGAAAATAATTTCTTTAAATATTATTCAGTTGTAAATGAATACAACTATGAAATGTCTATAAGTGATACGGAAGTTGAGGATTTAGCAGAAGAAACACAACATGCCGGCAATTATACATGTGAATTATGTCTAGAAGAGTTTTCTTTCAAATACCAAGTTTTCTGTCACTTAAAAGAAAAACATTTAAAAGAAGAAATTCCCCTTAAATGTGTACTCTGCAAATTAGAATTTGTTTCCGTAAATATGCACAAAAAACATTTAAAAACACATTGTCGTAATGAAGACAAAAATTTGTGTTGTGAAATTTGCCCAGCAAGATTTGTTAACTCAGAAAATTTAAAAAAACATGATTGTTCCACAAATACATTAAAAAACTTAGTAAAAGCGCAAAAGAAAAAGAAAAATAAAAAGTTAAAAACTGTTACTATTACAAGTAATAGAATACAAGAAACAATAATACGTTGTGCTCTATGCGATTCTACTTTCCAAAAACTTCAGCAATTACACCACCACATGCCCCTACATGCTGATGGCAGAAATGGAATTGATTTTAAAAACTCTATTTATGTTAAAGTATTTAAACACGATAAATTATATGATTATCCACTATGGCAGAAAGAGATTAAAGAAGCCTATAGTAAAGCTCATATAAGTCTTTTTTATCTCGCCGTCGATAAGTATGGTAATGAGCTAGATATTTCCGATTCTGATAGTGATGATGATACTTGTGCTATTATAAAGCAATACACCTGCGATATCTGCAAAATTATATACTATAAACGAAAATTATTGTTAAATCATCAGCGGGAACGGCACAATGATATAACGTTACCTTTTAACTGCAAAATTTGTAATCAACAATTTGTTAACATTAATTTATTGCAACAACATTTAAAAAAACTTTGCTGGAATAAACATCGAATAAATGGCAAACAATGCGAACATTGTAATAATCGTTTCATATGGCCTGAAAATCTAGTAAAACACATTGAAATGCAGCATACATCAAGAAATCTACGTAATGTAGCCACAACGAGTGTGGACGTTTTACAACAACATAAACTTCTTTATTACTGCCTTATGTGTCCGAAAACATTTTTAACAATTAAACATCTCGGAAAACATTTAGAGAGCCATTGTTCAACTCCAAAGGATATAAACAAGATTGAAAGTATTGTTCATTCCACATTGTGGCCCAATGATGAAAAGAAAATCATATGTAAATATTGTGACGAAACATTTAATACCTTAGCCAATTTAAAAGAACATTTTTCACCTACAAATCCAAAAAACTTTTGTGCTGATAGCCATTCATTAGCTAACTATTCAATCACTAATCAAAATGGTTTTGAATTACATTTAGAACTGGATTCGGAAACCGAAATAGAAGATACAGAAGAGACAGTATTTCCCTACATTTGTTACATATGCAGTAAATCATTTAAGCGAAAGTATCTAGTGGCTCAACATCAACGATCTATGCACAATTATGAATCGATTGAACTTAAATGTGAACGCTGTATATTTCGATCAGTCTCAACGAAAATATTAGATTATCATAAAGCTATACAATGTTTTAATGAGGAAAAAGAGTATGAATGTCATAAGTGTACTTTTAAATTTATGTGGGAAGAGAATCTTAAAAATCATGATCTTACTTTTCATGCTGATAATGATGAAACTAATGCTGTGTACACCAAAATTAATGATAACAATAGTTCAAATTGTAAACAAACTTCAGCACCAGTGAATGCCAAACCTTTGTGTAAAATTTGTGGAGTTCATTTTTCTAGCTTTTATAATCTTCAAGTTCATTTAATGAGGCATAAAAGTGAAAAACTGCACAAATGTGTAGAAACCAAAAAACTTCCTTACCCATGCACAATTTGTCCTAAATCATTCACAAAATTGGAAAATTTGAAACTTCACTTACTCCAACATAAAGGTGAGAAACCATACGAATGTAATGTTTGCAATAAAAAATTTGCATGCGAAAAGTATTTGAGAATACACCGTAATGGAATCGGACACAAAGAATCAGATGCAGTGGCTGAACCAAAAACAAACACTTCAAGCCAAACATTTCAAATGAAACCACGTACAGGCAAGAGACCATATGAATGCAATATTTGCAAAAAGACATTAAAAAACCGACGTTCCCTTGTTAATCACCAACGTACACATACTGCCGAACGAACCTTTAAATGTTCACTTTGTGAGAAATCATATTTTACGAAATATTTGTTAATAATACATAGCCGTATACATTCCGGTGAACGTCCATATAAGTGCAAATTTTGTGAAAAATCTTTTATCGACTCTCCAAATTTAAAATTACATATACGACTTCATACTGGCGAAAAACCATATAAATGCGAAGTATGCGATAAAGCATTTATATGTGCACGTTATCTAAAAAGGCATTGCATAAAAATGGAACATTATACTGAAAAGTAA
- Protein Sequence
- MNELAKSYDFILQVKNVNNKYMELLGMTKDHPAEQTVNNIXXXXXXXXXXXXXXXXXXTVNNIESNEQILSESDNTMSMEEFISEVKTEAEELTPYDIVLSKNFEDDHETCEENVEKTSMHLHDQNSYSSSHENGMWSLYRKIRKINKNFVCPKCKKKFKSSTACRQHLDIIHSLESSDHTSNSSSEEEESDNLPEEDNPTDDTFDSDKIQKIGNYYVCPICKGKFKSKTSCRFHISSLHLKPQKFTCSFCYKTFKCRNYFGRHLKRKHPRESIISNTKQIQFLFGNRLYSKPSAWLKVECNLCLITFSTTKELRKHLEIHNDAKTLEHLKLSDGIVKQFFSNINNLEIVKKTIVEDILENNFFKYYSVVNEYNYEMSISDTEVEDLAEETQHAGNYTCELCLEEFSFKYQVFCHLKEKHLKEEIPLKCVLCKLEFVSVNMHKKHLKTHCRNEDKNLCCEICPARFVNSENLKKHDCSTNTLKNLVKAQKKKKNKKLKTVTITSNRIQETIIRCALCDSTFQKLQQLHHHMPLHADGRNGIDFKNSIYVKVFKHDKLYDYPLWQKEIKEAYSKAHISLFYLAVDKYGNELDISDSDSDDDTCAIIKQYTCDICKIIYYKRKLLLNHQRERHNDITLPFNCKICNQQFVNINLLQQHLKKLCWNKHRINGKQCEHCNNRFIWPENLVKHIEMQHTSRNLRNVATTSVDVLQQHKLLYYCLMCPKTFLTIKHLGKHLESHCSTPKDINKIESIVHSTLWPNDEKKIICKYCDETFNTLANLKEHFSPTNPKNFCADSHSLANYSITNQNGFELHLELDSETEIEDTEETVFPYICYICSKSFKRKYLVAQHQRSMHNYESIELKCERCIFRSVSTKILDYHKAIQCFNEEKEYECHKCTFKFMWEENLKNHDLTFHADNDETNAVYTKINDNNSSNCKQTSAPVNAKPLCKICGVHFSSFYNLQVHLMRHKSEKLHKCVETKKLPYPCTICPKSFTKLENLKLHLLQHKGEKPYECNVCNKKFACEKYLRIHRNGIGHKESDAVAEPKTNTSSQTFQMKPRTGKRPYECNICKKTLKNRRSLVNHQRTHTAERTFKCSLCEKSYFTKYLLIIHSRIHSGERPYKCKFCEKSFIDSPNLKLHIRLHTGEKPYKCEVCDKAFICARYLKRHCIKMEHYTEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -