Basic Information

Insect: Chrysomya rufifacies
Gene Symbol: -
Assembly: GCA_014858695.1
Location: JACGTJ010002230.1:10235-16616[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 9.9 5.4e+02 1.4 0.0 2 23 241 262 240 262 0.89

2 16 1.1e-06 6.1e-05 23.2 2.8 1 23 289 311 289 311 0.99

3 16 2.6e-05 0.0014 18.9 0.4 3 23 319 339 317 339 0.92

4 16 0.0017 0.093 13.2 1.8 2 23 346 367 345 367 0.97

5 16 0.00059 0.033 14.7 1.2 1 23 373 395 373 395 0.95

6 16 4.6e-05 0.0025 18.1 1.7 1 23 401 423 401 423 0.99

7 16 0.0018 0.097 13.2 3.3 1 23 429 451 429 451 0.98

8 16 0.02 1.1 9.8 0.2 1 23 457 479 457 479 0.95

9 16 0.03 1.6 9.3 0.5 2 23 797 818 796 818 0.95

10 16 0.00041 0.022 15.2 2.7 1 23 840 862 840 862 0.98

11 16 1.5e-06 8.2e-05 22.8 1.8 3 23 870 890 868 890 0.96

12 16 0.17 9.5 6.9 4.3 1 23 896 918 896 918 0.97

13 16 0.0089 0.49 10.9 0.7 2 19 925 942 924 944 0.94

14 16 9.7e-06 0.00053 20.3 1.8 1 23 951 973 951 973 0.99

15 16 0.00037 0.02 15.3 2.5 1 23 979 1001 979 1001 0.98

16 16 0.0015 0.08 13.4 0.3 1 23 1007 1029 1007 1029 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	9.9	5.4e+02	1.4	0.0	2	23	241	262	240	262	0.89
2	16	1.1e-06	6.1e-05	23.2	2.8	1	23	289	311	289	311	0.99
3	16	2.6e-05	0.0014	18.9	0.4	3	23	319	339	317	339	0.92
4	16	0.0017	0.093	13.2	1.8	2	23	346	367	345	367	0.97
5	16	0.00059	0.033	14.7	1.2	1	23	373	395	373	395	0.95
6	16	4.6e-05	0.0025	18.1	1.7	1	23	401	423	401	423	0.99
7	16	0.0018	0.097	13.2	3.3	1	23	429	451	429	451	0.98
8	16	0.02	1.1	9.8	0.2	1	23	457	479	457	479	0.95
9	16	0.03	1.6	9.3	0.5	2	23	797	818	796	818	0.95
10	16	0.00041	0.022	15.2	2.7	1	23	840	862	840	862	0.98
11	16	1.5e-06	8.2e-05	22.8	1.8	3	23	870	890	868	890	0.96
12	16	0.17	9.5	6.9	4.3	1	23	896	918	896	918	0.97
13	16	0.0089	0.49	10.9	0.7	2	19	925	942	924	944	0.94
14	16	9.7e-06	0.00053	20.3	1.8	1	23	951	973	951	973	0.99
15	16	0.00037	0.02	15.3	2.5	1	23	979	1001	979	1001	0.98
16	16	0.0015	0.08	13.4	0.3	1	23	1007	1029	1007	1029	0.97

Sequence Information

Coding Sequence: ATGAATTTTAAGTCTGATCCATTTATTTTAAATATGTGCAGGACGTGTATGAAACAGTTTTCCAAAAATAAAAGGAAAAATACCATTAAAAATCAAAACATTTTAGAAGTACCAAGTGGTTCTAAAACAGATTCAAGCATATTGGAAATCCTGCAGATGATACAACCACAAATTAAAGTAGATATCGAGGATAATCTACCAACATTAATGTGTAACGATTGTGTTGAGAAATTATTAAAGACTCGAGATTTTGTAGAGATGTATAGAAATTCCGATAGAAAATTTCGTAAAATGTTGAATAATAATTCACTTGCTGCTAATGATATTGTAGAAATTGTTATGGATAAAGGGTTTTTTGATGAGAAATTATCCGATAATGAGAAAGTAGATGAGACATTGGAAGTAAGTGAATATAAAATAGAAATTGAAGAAGTTAATATAGAAGAAATGGATAAAGTAAATGAACAAAGCGATCAAAATTGGCCAGAATTTGATGATGAAGAACCAATACATGGAATGTCGGAAGATGAAACTGAAAATAAGGATACCGTTTTTGAAAATCCCTATACTGATACTAGTGATAACGAATGGATGCCAGAGGAATTTTGCCAAAAAACTTCCGAAAATAATTCAAGTGATTTCAAAACGATAAAAACTTCAAAACTACACAGTGAAGTAAAAGAAATTGCAGTTCCACTAAAAAATGAAGATGGCAGCATAACTTGTCAGGAATGCAAAATTGTTTCGGACAATATTGAAGTTTGGCAAGAACACATAGAACAACATCGACAGGAAAAAAAGCCTAAAAGAAAATATACAAAAAAATCTATTAAGCCGAGGAAAAATGCAAGCAAACAAAAAATCTACAAATGTGAATATTGTAACAAAGAATTTGCAAATAGTACTTCATATAAAAATCATTTGCGAACACATACAGGTGAGCAACCTTACTTATGCATCGAATGTGGTAAAAGTTTTAAAGTAGCCAGTAGCCTTAATACACATATGCTACGACATAAAGGCGAAAAGAATATTCAGTGTCCACATTGTCCAAAGAAATTTGTATGCTCAAGTGGTTTGTATGGACATATGATGATGCATTCGAAAGAAAAACCCTTTGTATGTGATATATGTGGTAGCGCTTTTCATCAAGCATATCAGTTGAGAAAACACAATCTTTATCATAATGGCATTAAAAAATATCAATGTGAATATTGTGATATGAAATTTGTTACCGGCGAGAAGCAAAGGCGTCATATGCGAACCCATACTGGTGAAAAACCTTATCGCTGTAAATATTGCGAAAGAGCTTTTGCTCAAAGTAATGATTGCATCAAACATCTAAGACAACATTTGGGTGATAATGTTTATCAATGCGAATTATGTCCGCAAAGATATCCATTGTTAAGAGATTTGAGAGCACATTTTGCCAATCATAAAGATGATGATGAAGAAACCCGTAAGCGCAATTTAGAAGCCAGATTGGAAGAGGAACGCAAGTTACAAATAAAATTGGGTCTTAAAGATTGTAGAACATGTATGCAGGATTTTTCCAACAAAAGAAGGAGGAAACCTGACAAAAATCAAAACATTTGTGAAGTGCTAAATGGATATAAGCATAAGATAACAATTATGGAAATTCTACAATTAATACAACCACATATACGGATACAAATGGATGATAATCTTCCTAAATCTATCTGTTTCTGTTGTATACAAAAAATAATTTCAATATATGACTTTATAGAGATGTATAGGAAAACTGACAAAACATTTCGTGAAATATTAAAGGATAATGAAAATCCCGTTAATTGTGAAGAAGAAAGTCATAGTCCTACTAATGAAACTATTTTGGAAAAGATTTATAAAACGCCAGTGGAAAGTGTACCTATCTCTTTGTATGATTTACAAATTGAAGACCATCTTAATGAAGATACTCCGAAAGATGAAGAAAGTGATTGGCCAGATTTTGATGATGATTCTGAAAATGATTTATTAGATGATCATTGTAATGACAATGAAGACAATGATAATGAATCCATATTTGAAAACCCATTTAGCGATGATAGTGATGATGAATGGAAGCCTGAAAGTCCGGAATTATTTAAAAAGAACATCCACCAAAATAAGTCTGACAACAAAGATGATTCTGCATTTTTTTTCGAAGAACTGCCCAAGAACAAATTATCAAAGAAAAGGAGAAAATCTATTTCAAATGATACATCAGCGAATAATCTAACCAAATCACAACTAGAAACTTCTGTCTCCAAAAAAATATCTGCCGAAAATTCTATATCCAGTGATAATTCAATAAATAACCTAGCAAAAAAGCAATTAGAAACTAATGAAGAAATTAAGCTGTCGAAAGATAAAGATGGTGGTGAGGTAGAATGTAAAAAATGTGGAAACGTTTTTGATAACATAAGACTTTGGCAAGAACATATTTGCGATCATCGACTTGAAAATGAGGCTAAATTGAAGTACAAATCAAAAAGAAAATTGCCTAAACAAAAGTGCTTTTCATGTGAATACTGTCAAAAAGAATTTCCCAAACATTCATCCTATAAATTACATTTACTAGTGCATACAGGTGAAGCAAATCACTTATGCACCGAGTGTGGAAAGAAATTTAAAACTTCAGGCGCTTTGAAGGTACATATGTTGCGACACAAAGGAGAAAAAACATTTCATTGTTCACTATGCCCTAAGAAATTTGTATGTTATAGCGGTTTATATAGTCATATGCTTTTACATACGAATAATAGGCCATGTGTTTGTGATATTTGTGGCAGTGCTTTCCGCATGCCCCATCAATTGAAAACTCATAGTTTATGTCATGGTGAAAGAAAATATAAATGTGAATATTGTGATAAAAGATTTATTACTCCAGAGAAGAGACAAGTACACACACGAACTCATACGGGAGAAAAACCTTATCGCTGTAAATACTGTGATAGGGCATTTGCTCAGAGTGGAGATTGTGTCAAACATTTGCGACAACATGTAGGTGATCAAATTTATATGTGTGAACTTTGCCCACAAGGATTTGTACGAAAAAGAGATATGCGTGAACATTTTGCCACTCATAAAGATGATGATGAAGAAACAAGGTTACGTAATTTAGAAGCTCGTTCAGAAGAACAGCGAAGGTTGCAGCAACTGACATTGACGGTTAAGAAAAGTTAA
Protein Sequence: MNFKSDPFILNMCRTCMKQFSKNKRKNTIKNQNILEVPSGSKTDSSILEILQMIQPQIKVDIEDNLPTLMCNDCVEKLLKTRDFVEMYRNSDRKFRKMLNNNSLAANDIVEIVMDKGFFDEKLSDNEKVDETLEVSEYKIEIEEVNIEEMDKVNEQSDQNWPEFDDEEPIHGMSEDETENKDTVFENPYTDTSDNEWMPEEFCQKTSENNSSDFKTIKTSKLHSEVKEIAVPLKNEDGSITCQECKIVSDNIEVWQEHIEQHRQEKKPKRKYTKKSIKPRKNASKQKIYKCEYCNKEFANSTSYKNHLRTHTGEQPYLCIECGKSFKVASSLNTHMLRHKGEKNIQCPHCPKKFVCSSGLYGHMMMHSKEKPFVCDICGSAFHQAYQLRKHNLYHNGIKKYQCEYCDMKFVTGEKQRRHMRTHTGEKPYRCKYCERAFAQSNDCIKHLRQHLGDNVYQCELCPQRYPLLRDLRAHFANHKDDDEETRKRNLEARLEEERKLQIKLGLKDCRTCMQDFSNKRRRKPDKNQNICEVLNGYKHKITIMEILQLIQPHIRIQMDDNLPKSICFCCIQKIISIYDFIEMYRKTDKTFREILKDNENPVNCEEESHSPTNETILEKIYKTPVESVPISLYDLQIEDHLNEDTPKDEESDWPDFDDDSENDLLDDHCNDNEDNDNESIFENPFSDDSDDEWKPESPELFKKNIHQNKSDNKDDSAFFFEELPKNKLSKKRRKSISNDTSANNLTKSQLETSVSKKISAENSISSDNSINNLAKKQLETNEEIKLSKDKDGGEVECKKCGNVFDNIRLWQEHICDHRLENEAKLKYKSKRKLPKQKCFSCEYCQKEFPKHSSYKLHLLVHTGEANHLCTECGKKFKTSGALKVHMLRHKGEKTFHCSLCPKKFVCYSGLYSHMLLHTNNRPCVCDICGSAFRMPHQLKTHSLCHGERKYKCEYCDKRFITPEKRQVHTRTHTGEKPYRCKYCDRAFAQSGDCVKHLRQHVGDQIYMCELCPQGFVRKRDMREHFATHKDDDEETRLRNLEARSEEQRRLQQLTLTVKKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -