Cruf011920.1
Basic Information
- Insect
- Chrysomya rufifacies
- Gene Symbol
- -
- Assembly
- GCA_014858695.1
- Location
- JACGTJ010003985.1:1-3029[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 4.9e-05 0.0027 18.1 1.3 1 23 199 222 199 222 0.96 2 15 0.0027 0.15 12.6 1.6 1 23 228 250 228 250 0.98 3 15 0.00027 0.015 15.7 1.1 1 20 256 275 256 278 0.95 4 15 2.5e-08 1.4e-06 28.4 0.9 1 23 284 306 284 306 0.98 5 15 0.1 5.5 7.6 7.2 1 23 312 334 312 334 0.98 6 15 0.0018 0.097 13.2 1.7 1 23 368 390 368 390 0.98 7 15 0.00094 0.052 14.0 3.0 1 23 396 419 396 419 0.97 8 15 0.00038 0.021 15.3 3.9 1 23 499 522 499 522 0.96 9 15 0.0068 0.37 11.3 2.8 1 23 528 550 528 550 0.94 10 15 4.3e-05 0.0024 18.2 2.2 1 23 556 578 556 578 0.98 11 15 1.1e-07 6.2e-06 26.4 1.0 1 23 584 606 584 606 0.98 12 15 0.058 3.2 8.4 9.7 1 23 612 634 612 634 0.98 13 15 0.0044 0.24 11.9 0.2 1 23 639 661 639 661 0.97 14 15 0.001 0.057 13.9 7.9 1 23 667 689 667 689 0.97 15 15 6.9e-06 0.00038 20.7 2.4 1 23 695 718 695 718 0.96
Sequence Information
- Coding Sequence
- ATGGATCCTTTACATGAATTATGTTTAACTTGCCTTTCCAAACCTAATCTACCACGTAAACTTGATGATATTTTAATGGAAAATCTTAGAATTATGGAAATTCTGCAGAAATTAATACCTAGCTTTATGGAAAATCAAGAATTACCTTTACCCAACTGTATATGTAGTGAATGTTTGGAAAAACTTATGTCGGCATTTACATTTCAAAAACAATGTTTGGATTCTATAGAAAATTTACATAAAATGTGGAAGAATAGCTTTCAAGAGAAATTAGTTAAACAAGAAATAGAGGAAATAGTTTTAAATAAAATCGAAGATGATACATTTGATGATGATGATAATAATACACAACATGAAGCAAATCCTTTTGAAGATGTTACAATGGATGCTTTATTAGAGGAAAAACAAGATTTTGAAAAGGAAATTGTACAAAAAACAAATGATTCTTTGAACGATAATGATAACACAAATGAAATGCTTTTCAATGGCTTTGAAATGCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAGTATTGCAGAGGGATGTAAAGATAAAGAAGGTGCAGCAATTAATGGTTATAAATGTGATTACTGTGAAAAATCATTTAAACTACCCAAAAGTTTAGCCACTCATAAAGCAAGAACACATTTTCCAGAATTAATATACAATTGTAAAATATGTAATAAAAAGTTTTTTATGGAAGAAGTTTATAAGGTGCACATCAACAAACATCAGGGTATTAAACCTTATAAATGTGAACAATGTGACAAAGCTTTTGTTTCAGTTGGTTTACTTAAACAACATTTAATATGTCATTCGGATGCAACACCATATCCTTGTAAAATTTGTGGCAAAGCCTTTAATCGTTCGTCAAGTTTAAAACAACATTTACAGCGTCACAACAGCGAAAGACCTTACAAATGTAAATTATGTTCAAAAACTTTCAAATGTATATCCGACTTTTCCAAACATCGTTCCAAACATACTAAAAGACGTTTTAAATGTAAATTTTGTAATTCACTACATTTGACTGCTAGAATGTTGCAGCTACATCAAGAGCAAAAACACGGTGAAAATAAACCCTACAAATGTAGTCAATGCAATGAGAGCTTTAGAGCACGCACAGCTAGAAGACGTCACGAAAAAATACATAGCGGAGAAAGACCTTATAAATGTGAACATTGTGGAAGAGAATATTTTGATAATATTGAATATAAAATGCATATAAAATATAAACATAAAGATAAATATAATCTAGATAGCTGTGAAGAAGATGATGTCGAATATTCTGAATCATCTTCAGATGAAATGAATGAAGAAAATAAATCTATGCAATTAGAAACATCACAAGATAATAAACAAGAAGACACTGAAAGTAAAGATGAATTAAAAGCAATAGTTAAAGAAATGCAGGATAAAACAGAAATACTTAAAGAGAAGAAGGAAAGTAAAGCCGAAAAGAAGAAAAAACATATTCATAGATGTGAAACGTGTAATAAATCTTTCAAAGAAGCTCATGGTTTAAATGTACATTTATCGCGTAAACATTATAGTAATTTTAAATATGTATGTGAAATCTGTAATAGAGGTTATAATAATGAAGATTATTATCAAAAACATTGTAATCGTCATTTAGGTGTGAAAGCGCATAAATGTCAACATTGTGGCAAAGCTTTCGAGACGGGCGGAACATTAAATCAACATTTAATATCACACTCCAAAGAGACTCCCTACATGTGTTCTATATGTGGCAGAAGCTTTAATCGTTCTGGTACTTTACGTACCCATATGTTGCGGCATAATGATGCTAAACCCTATGAATGCTCAGAATGTCATAAACATTTTAAATGTCATTCGGATCTTTTGCGTCATGAAAAGATTCATGGTGAGAAACCTTTTGAATGTGAATTATGTGGCAAACGTTTATCGAGTACCACAGCTATGTCAGTACATAAAATGGTGCATTCTGGAGAAAAACCTCATGAATGTAATTTTTGTGGTAGATGTTTTAATTCTACTTCAAATTTAAAATGTCATATACGTATACATACCGGCGAAAAACCTTATAAATGTCCATTTTGCGGCAAAACTTTTAGACAAAGTTATGATCGTAAGAAACATGCTTTACGCATGCATCCAGCAGAAATGGCAGCCAATAATGGAGAGTTTGTGGAGGAAAAGAAAAAGTAA
- Protein Sequence
- MDPLHELCLTCLSKPNLPRKLDDILMENLRIMEILQKLIPSFMENQELPLPNCICSECLEKLMSAFTFQKQCLDSIENLHKMWKNSFQEKLVKQEIEEIVLNKIEDDTFDDDDNNTQHEANPFEDVTMDALLEEKQDFEKEIVQKTNDSLNDNDNTNEMLFNGFEMPXXXXXXXXXXXXXXLSIAEGCKDKEGAAINGYKCDYCEKSFKLPKSLATHKARTHFPELIYNCKICNKKFFMEEVYKVHINKHQGIKPYKCEQCDKAFVSVGLLKQHLICHSDATPYPCKICGKAFNRSSSLKQHLQRHNSERPYKCKLCSKTFKCISDFSKHRSKHTKRRFKCKFCNSLHLTARMLQLHQEQKHGENKPYKCSQCNESFRARTARRRHEKIHSGERPYKCEHCGREYFDNIEYKMHIKYKHKDKYNLDSCEEDDVEYSESSSDEMNEENKSMQLETSQDNKQEDTESKDELKAIVKEMQDKTEILKEKKESKAEKKKKHIHRCETCNKSFKEAHGLNVHLSRKHYSNFKYVCEICNRGYNNEDYYQKHCNRHLGVKAHKCQHCGKAFETGGTLNQHLISHSKETPYMCSICGRSFNRSGTLRTHMLRHNDAKPYECSECHKHFKCHSDLLRHEKIHGEKPFECELCGKRLSSTTAMSVHKMVHSGEKPHECNFCGRCFNSTSNLKCHIRIHTGEKPYKCPFCGKTFRQSYDRKKHALRMHPAEMAANNGEFVEEKKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -