Basic Information

Insect: Chrysomya rufifacies
Gene Symbol: -
Assembly: GCA_014858695.1
Location: JACGTJ010003160.1:18808-21667[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0041 0.22 12.0 0.1 1 23 187 209 187 209 0.98

2 12 4.9e-05 0.0027 18.1 1.5 1 23 251 274 251 274 0.97

3 12 4.8e-05 0.0027 18.1 1.6 1 23 280 302 280 302 0.97

4 12 0.00046 0.025 15.0 0.4 1 23 350 373 350 373 0.95

5 12 7.9e-05 0.0043 17.4 0.7 1 23 379 402 379 402 0.97

6 12 8e-05 0.0044 17.4 1.5 1 23 416 438 416 438 0.98

7 12 4.9e-05 0.0027 18.1 3.6 3 23 456 476 454 476 0.95

8 12 2.6 1.4e+02 3.2 1.0 2 23 483 504 482 504 0.87

9 12 0.00043 0.023 15.1 1.2 1 23 510 532 510 532 0.94

10 12 1e-07 5.5e-06 26.5 2.2 1 23 539 561 539 561 0.99

11 12 1.1e-06 6e-05 23.3 0.5 1 23 567 589 567 589 0.99

12 12 0.00014 0.0076 16.6 0.3 1 23 595 617 595 617 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0041	0.22	12.0	0.1	1	23	187	209	187	209	0.98
2	12	4.9e-05	0.0027	18.1	1.5	1	23	251	274	251	274	0.97
3	12	4.8e-05	0.0027	18.1	1.6	1	23	280	302	280	302	0.97
4	12	0.00046	0.025	15.0	0.4	1	23	350	373	350	373	0.95
5	12	7.9e-05	0.0043	17.4	0.7	1	23	379	402	379	402	0.97
6	12	8e-05	0.0044	17.4	1.5	1	23	416	438	416	438	0.98
7	12	4.9e-05	0.0027	18.1	3.6	3	23	456	476	454	476	0.95
8	12	2.6	1.4e+02	3.2	1.0	2	23	483	504	482	504	0.87
9	12	0.00043	0.023	15.1	1.2	1	23	510	532	510	532	0.94
10	12	1e-07	5.5e-06	26.5	2.2	1	23	539	561	539	561	0.99
11	12	1.1e-06	6e-05	23.3	0.5	1	23	567	589	567	589	0.99
12	12	0.00014	0.0076	16.6	0.3	1	23	595	617	595	617	0.95

Sequence Information

Coding Sequence: ATGCCACCCGATAATAGTTCAGAAAAATGTCGCACATGTTCAAGTCCCACCAATAATATTATTTATCATACAATCTATGATTATGTGGAAGATTATAAAGTTTTGGAAATGTTAAATGCTATAGTACCACAAATTGATTACAATACAACTCCCTTGCTATTATCCACTGTTATATGTAAATATTGTGTAGAAAAATTATTAATTGGCTTTAAATTTCAACAATTATGCATAGAAACTGATAAGAAATTTCAAGGTGAATTGGAAGTTAATATGTTTGATTTGGTCCAGCCAAAGTTGGAGGATACTACAGATCCTTTGACACAAGTGGAAAGCAATAACAGAATGGCCGAATTGCCAATAGAAGAAATAAAAACAGAAATATCTTTTGCTGATAGCGAAGTGGCCGATGATATGCCTACAGAAGTGGTAAAAAATGAAGTTTCCTATGAAATTGTTGAACAATTGGATAATAATAGTGCTGATGAATTTCAAGATTTTAATAATGATTATATTTTATCGAAAAACAATGTACGTCAGGAAGGAAATAATACGTTCACATTTGAATGTCCCAAATGTCCGGAATTATTTGAGAAAATGTATTTGTTAGCCGCCCACTTTAAGATACACAAACAACCAGCAAAACAAACTGAAAAACCGAAAGAAATGGAAATTGAAAGTGTTGAAGATGATGCCGAAAGTTCTAACAAAGAAACAGAATTAAATGATGCTAAAAAGAATAAGGAAACTTTTTTTCCTTGCACTTTATGTGGAAAACTATTTGATCGTATTCATAGTTTAAATCGTCACACGAACACTGTTCATAATGAATGTCGACCACATGAATGTGAAATTTGTAAATATCGCTTTGCCACCCCCAATCTACTTTTTTCGCATTTACGACAACATGAGGATAATAATGATAAATTAGTTATTACAAAATCAAGATTAGATAATTTAATATCTAAGGAAAATGATGATGATTCTGATTGTGATAGAGATGAAGAATTGGACCCATTTGAAACGAAAAAGAAGAAAAAAGATCAAGAATTTCCTTGTAAAATTTGTGGTAGAATGTTTCATGTGGCTTTTGCTTTAGCAAGACACAATAACTCTGTACATTCTGAGAGTCGACCATATGAATGTGATATTTGTAAATATCGTTTCGACACCGCCAAACTTCTTGAGTCGCATAAAAAAATTCAACATGAAAAAAATGATGTAGCCATAGTATTACCAGCTGAAAGATTTAAATGTCCACACTGTACGGAGAGTTTTCCAAAATTGAAATTACTTGTTGAACATCGTAAAATACATACGCGTAAACCTAGAAAAATCCTACCAAAACCTTCAAATGAATCACATTTATGTACTCTATGCGGTAAATCGTATAGTACTCTACACAATTTAAAAGATCATTTAGCGAGACATGCAAATTTAAGGAATGTTCAATGTCCAGAATGTCCTAGTCGCTTTAATTGTCATGTGGATATGATGAATCATGCAGAAATTCATAAGAAAGATAGACGTCATATATGTGACAGATGTGGTGCTACATTTACACGCAACTACTCTCTGTATATGCATACGTTAGCACATACATCAAAAATTAAATCCTTTAAATGCGATCAATGTCCTTTAACTTTTACTAAACCTTATACCTTAAAACGTCATATGCGCACACATACTGGTGAGAAACCGTACAAATGTAAATACTGCGATCGTGCTTATGCCGCAAGTGGAGATTTAAATAAACATTTAAGAACTCATGTAGGAACAAATACCTATATGTGCGATGAATGTCCCAAGGCTTTTAAATATCTAGCTAAATTGAAAGAACATAAAGCGGAACATTATAAAATGTCACTGAAACGTTCAAATGAAATTGAAGAACAAAACCCAAAGCAAGAGACACAGGAAGATGAAAAAAGTGACAACCCAAATAATAAAGAAAAGCAGGAAAAGAAAAAAATTGAAGTGATTGATCTTAGATTATTACAAAACACAATACAAGATACGCTTTAA
Protein Sequence: MPPDNSSEKCRTCSSPTNNIIYHTIYDYVEDYKVLEMLNAIVPQIDYNTTPLLLSTVICKYCVEKLLIGFKFQQLCIETDKKFQGELEVNMFDLVQPKLEDTTDPLTQVESNNRMAELPIEEIKTEISFADSEVADDMPTEVVKNEVSYEIVEQLDNNSADEFQDFNNDYILSKNNVRQEGNNTFTFECPKCPELFEKMYLLAAHFKIHKQPAKQTEKPKEMEIESVEDDAESSNKETELNDAKKNKETFFPCTLCGKLFDRIHSLNRHTNTVHNECRPHECEICKYRFATPNLLFSHLRQHEDNNDKLVITKSRLDNLISKENDDDSDCDRDEELDPFETKKKKKDQEFPCKICGRMFHVAFALARHNNSVHSESRPYECDICKYRFDTAKLLESHKKIQHEKNDVAIVLPAERFKCPHCTESFPKLKLLVEHRKIHTRKPRKILPKPSNESHLCTLCGKSYSTLHNLKDHLARHANLRNVQCPECPSRFNCHVDMMNHAEIHKKDRRHICDRCGATFTRNYSLYMHTLAHTSKIKSFKCDQCPLTFTKPYTLKRHMRTHTGEKPYKCKYCDRAYAASGDLNKHLRTHVGTNTYMCDECPKAFKYLAKLKEHKAEHYKMSLKRSNEIEEQNPKQETQEDEKSDNPNNKEKQEKKKIEVIDLRLLQNTIQDTL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -