Cruf001785.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chrysomya rufifacies
Gene Symbol
-
Assembly
GCA_014858695.1
Location
JACGTJ010010040.1:1332-9558[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.00021 0.012 16.1 5.0 2 23 129 150 128 150 0.98
2 9 8.3e-07 4.6e-05 23.6 3.1 1 23 156 178 156 178 0.99
3 9 1.3e-07 7.2e-06 26.2 1.8 1 23 184 206 184 206 0.99
4 9 5.7e-06 0.00031 21.0 3.6 1 23 307 329 307 329 0.99
5 9 5e-06 0.00028 21.2 0.9 1 23 335 357 335 357 0.98
6 9 0.00012 0.0065 16.9 3.8 1 23 363 385 363 385 0.98
7 9 9.6e-07 5.3e-05 23.4 1.7 1 23 512 534 512 534 0.98
8 9 1.4e-05 0.00079 19.7 3.6 1 23 540 562 540 562 0.99
9 9 2.6e-07 1.5e-05 25.2 1.2 1 23 568 590 568 590 0.98

Sequence Information

Coding Sequence
ATGCACCTCAATCATGCTACAGCTGTAAGTGCGGCCGCTATGGTCAACTATCAACACTATGCACCGGCACAAATAACCACTTCCCATGGTGTAACCACTTCTACGGGTCAACAACAGACAACAATATCTGCAGCTGGACTGCAGCAAACCCCATTTACGCTGCATCAATTGACAGCGGTACAAGCCATACAACATCCCACTCACCAAGCCATGCTACATCCACAACATCCATTGGTTCATTTATTGGACATTTCAACAACGGCGGCAGCTTCCTCATCGATCAACAATAATCCCACAGCACCAATAACACCAATGCCAGTGACTAAAATCGAAATGCCCGAAGAGATACCCGAGCCGATAATCGACGATCCGCGCAAAAAGAAACAGTGCCACATTTGTAAAAATAAATTTCGTCAGTTGACCACTTTGCGCAATCATATGAAAATTCACACCGATGAAAGACCATACAAGTGTAAACATTGCGATAAGGCATTTCGCCAAATATCAACTCTAACGAATCATGTCAAAATTCATACTGGCGAGAAACCATTCAAATGCAATATCTGCTCGAAGGACTTTCGACAACAATCGACTTTAATAAATCACATTAAAACGCATAAGGTTTTTGCATCACTGGCCGAATCAAATCAAACGCCAGCATCAATTTTAAACTATCAGACACAACCGCAGGGTACTTCACGAAAGGGTCAATCAAAATCGATTATCCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAATTGTAACATATACACCACAGCAAAGACAAAATATAACGAAAAGTCTTTATACAGGTAGTTACAACTCACCCCAAGCCGATGAACTGGTTAAGCCGTATCAGTGTAAGGTCTGTCAGAAACGTTTTCCTCAACTAAGTACCCTGCATAACCATGAACGTACGCATATTGATCCGAAACCGTATAAGTGCGATACATGCGAAAAGTCCTTTAGTCAATTGGCAACGTTGGCGAATCATAAGAAGATCCATTCGGGTGATAAGCCATATGCATGTGCTTACTGTTGTATGACGTTCCGCCAGCAAAGCACCCTTAACAATCACATGAAGACCCATGCCAATCAGGTGGCCACCATAACAACCAACTCTACCACAGCAGGCACAGGCGGTGGAGGAGTGGCTGGACAAGGAGGAAATCATCATCCTCATCACCATCAGGCGGGCAATAACAACATACCCCTAGCAGCTGCTACTATAATGGTGACACCAACCGCCTCAGGACATCTACAGATACAACCACAAGTAGAGCACCATCCTTTGTTACATTTTCTAGACAGCAATACAACCGTTAGCACCCTTAGCACGAAGGAGCAATTTGCAGCGGCAAACAGCAACAACAATAATAACCATAATGCCAGCAACAATACAAATAATACAACAACTACCACAGGTATTGTGGCTCACTGTTTACGTAACAGTTGTCCAGATCGTCCATTTATGTGCAGTGTCTGCCGTCGGGCATTCTCACAACAGAGCACCTTAACCAATCACCTGAAGACCCATACCGGTGAAAAACCCTATAAATGTAAAATATGCGAAAGTCATTTTAGACAATTGTCCACACTAAATAATCATATGAAAATACATACGGGTGAAAAGCCCTATGCTTGTTCCTATTGTCCTAAGCAATTTAGACAAAAAAGTACACTAACAAATCATGTACGTATTCACACTGGCTGA
Protein Sequence
MHLNHATAVSAAAMVNYQHYAPAQITTSHGVTTSTGQQQTTISAAGLQQTPFTLHQLTAVQAIQHPTHQAMLHPQHPLVHLLDISTTAAASSSINNNPTAPITPMPVTKIEMPEEIPEPIIDDPRKKKQCHICKNKFRQLTTLRNHMKIHTDERPYKCKHCDKAFRQISTLTNHVKIHTGEKPFKCNICSKDFRQQSTLINHIKTHKVFASLAESNQTPASILNYQTQPQGTSRKGQSKSIIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIVTYTPQQRQNITKSLYTGSYNSPQADELVKPYQCKVCQKRFPQLSTLHNHERTHIDPKPYKCDTCEKSFSQLATLANHKKIHSGDKPYACAYCCMTFRQQSTLNNHMKTHANQVATITTNSTTAGTGGGGVAGQGGNHHPHHHQAGNNNIPLAAATIMVTPTASGHLQIQPQVEHHPLLHFLDSNTTVSTLSTKEQFAAANSNNNNNHNASNNTNNTTTTTGIVAHCLRNSCPDRPFMCSVCRRAFSQQSTLTNHLKTHTGEKPYKCKICESHFRQLSTLNNHMKIHTGEKPYACSYCPKQFRQKSTLTNHVRIHTG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00350334;
90% Identity
iTF_01261193;
80% Identity
-