Cruf005259.1
Basic Information
- Insect
- Chrysomya rufifacies
- Gene Symbol
- ZNF275
- Assembly
- GCA_014858695.1
- Location
- JACGTJ010003160.1:11344-15025[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0003 0.016 15.6 1.2 1 23 198 220 198 220 0.97 2 14 3.1e-05 0.0017 18.7 1.5 1 23 226 248 226 248 0.98 3 14 2.4e-06 0.00013 22.2 0.2 1 23 295 317 295 317 0.98 4 14 6.2e-06 0.00034 20.9 0.7 1 23 427 449 427 449 0.96 5 14 0.11 6.1 7.5 2.4 1 23 455 477 455 477 0.92 6 14 4.1e-06 0.00023 21.4 0.3 1 23 494 516 494 516 0.98 7 14 0.019 1.1 9.9 0.5 1 23 525 548 525 548 0.95 8 14 0.00067 0.037 14.5 4.9 1 23 554 576 554 576 0.98 9 14 0.00018 0.0099 16.3 0.4 2 23 583 604 582 604 0.97 10 14 2.2e-08 1.2e-06 28.6 0.7 1 23 610 632 610 632 0.96 11 14 0.00013 0.0073 16.7 0.8 2 23 667 688 666 688 0.95 12 14 1.2e-05 0.00065 20.0 3.2 1 23 694 716 694 716 0.99 13 14 2.2e-06 0.00012 22.3 0.7 1 23 722 744 722 744 0.99 14 14 5.6e-05 0.0031 17.9 0.3 1 23 750 772 750 772 0.97
Sequence Information
- Coding Sequence
- ATGTCTTCAACGGATTTATCCTCCAAATGTCGCACTTGCTTAAGTGCCTCCCAAGTTTACCATCAACTTTTCGATTATGTGGAGGAGAATTATAAAATTTTGGAAATGTTAGATGGTATAGTACCACAAATTGATATTAAGACTTCTTCACAATTTTCAACGTTGGTATGTAAGTCGTGCGTGGACAAATTGTTGACTGGTTATAAATTTCAACAATTATGTATTGAAACCAATAATCGTTTACATGATTTATTGGGCCTGGCCGTGTTTGAGACAGCTCCAAAATTGGAGAAAATTTTGGATCCTTTAACGGGTGAGGAAAGTTTTAAAATGAAACAGGAGATGCCAGAAGAAGAATTTGAAAATGAAATAAATCCCGGAGATTTGCTGCAAACAATAGAATCGGATAATGACAATGACTGGGGACCATTGGATGATGAGGGTGGTGGTGGTTCTGTTAATGAGAGTGGAAGCGATACAGATTCAAGTAATGAAAAACTTTCCATCTTAAAAGAAAGATCCAACAAGAAACCTCCCTCAAAGACAGAAAATTCAGAAAATACTTCTAAACAAAAAAGCCCAAGGGGCTCCTTTCCTTGCTCACAATGCTCAAAAGTTTTTAGTAGCCTTAATCGCCTAAAACAGCATACGTCTATACATGAAAAGAAGCAGGCTTATTCATGTGATATCTGCACCACCAGTTTTAAAAATGAAAAAGCTTTAAAATCCCACAAGTTAACACACACAAATAGTGATATTGCTGTTAACGAAACGGAAAGAAATTTACAAGAAAATCAAAATTTGAATAAGGAACACAAACCCTTTGAAAATAATGAAGATCTGGAATCTAAAGATGATAAAGTTTCTAAGGAATTGTTAACATTTCAATGTCCCGATTGCCCTAAGATATTTGAGAAAAAAGCCTCTTTATCGGCTCATTATAAAGTACACAAGAAATTAAAAAAACTGGATAAAAGTGAGGAAAATGATAATGAAAATAATAAAGAATTAGATAATAAATTAGAGGAATGTAAGGTTATTGTTAAGGAAGAAATAGAAGTAACACCACAAATTTTTGAAGAACCCATAGATGATGATATTAATAATGAGGATAATAATACAGATTGGTTTAATGATAATGAACCATCAAATGATGATTCCGAAAATGAGTTCTTTGCCAAACCTCGAGCCAAAGAAACCAAGAAAAATTTGGATTTTATAGATACTGGTGTTGGCGAGATTGAAAAACCTAATAGCAGCAATAAAAGAAGTGGTCACTTTCCTTGCAAAATGTGTGGCAAAGTTTTTGATCGTCCTTATCGTTTAAAACGTCACAGTTCTGTACACTCACCCAGTCGTCCACATGAATGTGAAATTTGTAAATATCGTTTTACTACCATCAATATACTTAAATCTCATTTGTTTCAACATGAAAATGAATCGGGTTTATTTCTTAGCCTACAATCTCGTCCCGAAGGTTTTAAATGCCCCGATTGCCCAAGACGTTTTGAAAAGCAAGCCTCACTTTCGGCTCATCGTCAAATACATACACGTAATGCCTCGGAAGCTAATTATCCCTGTATGGTTTGTCAGCGTAACTTTATGTCTGTACGTTCTTTAACTGAACATATCACTAATAAACATCCAGAAGTAGAGAAACATAAATGTGATCAATGTGATAAGACATTTGTGTTACATGCCCATCTGGTGGAACATTTAAATCGTCATAAGGGTAATCGTAATCTAGTATGTTTGATATGTGAAAAAGAATTTGGCTATACGAATACTTTGAAGGAACATATGCGTACTCATAGTGGCGAGAGTCCCTATCTGTGTCCGCAATGTGGTAAAACCTTTCGTAGTGCTAGTAATTTACGTCAGCATATGGAGAGGCATACTGGTTTAAAGAAATATCAATGTCCAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTTTGTGATATGTGTGGTTCGCGTTTTACGCGGGCTTATTCATTACAAAAACACAAATTACTACATTCGGGTGAGAGGCCGTTTAAGTGTGATCAGTGCAATATGACTTTTGCTATAGTTTATCATCTGCGAAGACACATGCGCACCCATACCGGTGAAAAGCCCTACAAATGTAAATATTGTGAACGTGCTTATGCCGAAAGTGGCGATTTAACAAAACATTTAAGAACACATGTAGGTGAAAATACCTATATGTGTGATCAGTGTCCAATGGCTTTTAAATACCAAGCGGAATTAAGGCAACATCAATCGGAACATTATAAAATGCAACAGAAACTCTTGCAAGAACAGCAAAAACAAGCACTAGAACAAGAGCAACAACAGGAAAGTATACCCACGTCAATTGAATCTCCGCTTCAAAATGAAACGAATTCATTTGGGCCAAAGATTGATAACTCATCATTAGTTGTATCAAGTGGAAGTGGTTTCTTCCCCAGAAAAGAGCTTCCAGAAGCAGCTGAACTGTTACAACAACAACAACAGCAGCAGCAAAACAATGAAAATATGTATACAAGTGGTATGCAATATTTACCGTTAGCTATTCATCAACTACAAGAAGTTCAACAACAAACACAACAACAGCAGCCAGAAAAAAAGGAAGACATTGTAACAGGAGCTCAGCAACAAGACAATTTAGATTTTAAAAAATCTAACTAA
- Protein Sequence
- MSSTDLSSKCRTCLSASQVYHQLFDYVEENYKILEMLDGIVPQIDIKTSSQFSTLVCKSCVDKLLTGYKFQQLCIETNNRLHDLLGLAVFETAPKLEKILDPLTGEESFKMKQEMPEEEFENEINPGDLLQTIESDNDNDWGPLDDEGGGGSVNESGSDTDSSNEKLSILKERSNKKPPSKTENSENTSKQKSPRGSFPCSQCSKVFSSLNRLKQHTSIHEKKQAYSCDICTTSFKNEKALKSHKLTHTNSDIAVNETERNLQENQNLNKEHKPFENNEDLESKDDKVSKELLTFQCPDCPKIFEKKASLSAHYKVHKKLKKLDKSEENDNENNKELDNKLEECKVIVKEEIEVTPQIFEEPIDDDINNEDNNTDWFNDNEPSNDDSENEFFAKPRAKETKKNLDFIDTGVGEIEKPNSSNKRSGHFPCKMCGKVFDRPYRLKRHSSVHSPSRPHECEICKYRFTTINILKSHLFQHENESGLFLSLQSRPEGFKCPDCPRRFEKQASLSAHRQIHTRNASEANYPCMVCQRNFMSVRSLTEHITNKHPEVEKHKCDQCDKTFVLHAHLVEHLNRHKGNRNLVCLICEKEFGYTNTLKEHMRTHSGESPYLCPQCGKTFRSASNLRQHMERHTGLKKYQCPXXXXXXXXXXXXXXXXXXXXXXXXXVCDMCGSRFTRAYSLQKHKLLHSGERPFKCDQCNMTFAIVYHLRRHMRTHTGEKPYKCKYCERAYAESGDLTKHLRTHVGENTYMCDQCPMAFKYQAELRQHQSEHYKMQQKLLQEQQKQALEQEQQQESIPTSIESPLQNETNSFGPKIDNSSLVVSSGSGFFPRKELPEAAELLQQQQQQQQNNENMYTSGMQYLPLAIHQLQEVQQQTQQQQPEKKEDIVTGAQQQDNLDFKKSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -