Cruf014086.1
Basic Information
- Insect
- Chrysomya rufifacies
- Gene Symbol
- -
- Assembly
- GCA_014858695.1
- Location
- JACGTJ010000573.1:49531-55183[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.005 0.28 11.7 5.0 1 23 217 240 217 240 0.95 2 23 0.018 1 10.0 6.5 1 23 283 306 283 306 0.96 3 23 0.0014 0.078 13.5 0.7 1 23 313 336 313 336 0.97 4 23 0.0008 0.044 14.2 0.7 2 23 367 388 366 388 0.96 5 23 0.002 0.11 13.0 1.2 1 23 463 486 463 486 0.98 6 23 0.014 0.79 10.3 1.0 2 20 600 618 599 621 0.94 7 23 0.0038 0.21 12.1 0.9 1 23 698 721 698 721 0.96 8 23 0.0024 0.13 12.7 1.3 1 21 728 748 728 749 0.95 9 23 0.014 0.75 10.4 0.3 2 23 761 783 760 783 0.94 10 23 0.0089 0.49 11.0 0.2 1 23 834 856 834 856 0.98 11 23 0.013 0.73 10.4 0.2 3 22 884 903 882 903 0.94 12 23 6.7e-05 0.0037 17.6 5.9 1 23 954 977 954 977 0.98 13 23 0.27 15 6.3 0.7 1 23 1014 1037 1014 1037 0.96 14 23 2.2e-06 0.00012 22.3 1.4 1 23 1099 1121 1099 1121 0.98 15 23 7.6e-06 0.00042 20.6 0.9 1 23 1128 1150 1128 1150 0.99 16 23 8e-06 0.00044 20.5 6.3 1 23 1156 1178 1156 1178 0.98 17 23 0.00011 0.0061 16.9 3.8 1 23 1184 1206 1184 1206 0.96 18 23 0.0025 0.14 12.7 1.5 1 21 1212 1232 1212 1236 0.92 19 23 0.00029 0.016 15.6 0.1 3 23 1266 1286 1265 1286 0.99 20 23 0.0014 0.075 13.5 5.1 1 23 1292 1314 1292 1314 0.98 21 23 2e-06 0.00011 22.4 2.2 1 23 1320 1342 1320 1342 0.99 22 23 5.7e-07 3.2e-05 24.1 1.1 1 23 1348 1370 1348 1370 0.99 23 23 0.06 3.3 8.3 1.4 1 21 1376 1396 1376 1400 0.91
Sequence Information
- Coding Sequence
- ATGGCTAGTGATGTTAAAAGTTCATGTTTCATAAATGGTAAATTGTACAAGTGTCGAACTTGCTTTGATCCCGGCCAATCACTTTATTCCTTGAATGATGAGTGTAACAAGACTAAAACTTGGCGAGACCTATTAAAAGACGTCGCCCAATTACAAACATCTGAAGATGAACTACTACCAAGTACTGTGTGTTCCAAATGTCTGGATAAACTTATAACATTTTACGATTTTATTTTACAAATTGATAATGTTAATAAAAAATATATGGAATTATTGGGAAACATTAGTGATCCACTAGCCGTAGGACGTTTAAATAAAAATGATATCTTCAGTAGTAGATCTACAATTGTCAAACCGATAGAAGAGGAATTAATATCCGAGATTAAAATGGAAAAAGAAGATGTAGAAGAATACGTTTCATGTAATAATGATAAAGTTGACACATTTGATGTAAATATACCTACAACAGCTATGGAACTTATATGGTCTCCAACTGCTGAACGCAATCAACATGTAAACAATGATAACTGTGATGAATCCAGTTTATCTTCTGAAGAAACAGATTGGATGCCGCAAAAAAAGTCAAGAAATTTTTTATATGGTCATATGAAGGAATTTTATGACAAAATAAGAAAAGTAAACAACCGATATATTTGCCCAAAATGTAAGAAAAAATTTTCAACCACATCCTCTTGTCGCCGTCATTTAGATAAAATGCATACTAAAGAATCCAGTGAAGATTCCAGCTCGTCATCTTCTGATGAATGTAATGATGTACCATCTACCACAACTAGCCAAACAAAAGATGATGCCGTTTTCGAAAAAATAGAAAAGATCGACGATCGTTTTGTATGTCCTATATGTAAAAAAACCTTCACTTTACACAGAAATTGTCGACGTCACATACAATATTTCCATTTAAAAGAAGAAATAACCTTTTATTGTGGATTTTGTGAATTGACTTTCACTATCAGAGACTATTTAAACGCCCATCTTAAACGTATACATCCAGGAGAAACATTAGAAACGAATATGAAAAAGTTGGAAAGATTATTTGGAGAACGTTTATATAGTAAGCCAACAACTTGGCAATGTGTGGAATGTAAATTGTGCTCTATAACATTTACTACAACTAAAGAATTACGTCAACATTTGGAAAATCATTACAATTTACTATATAATATCGAATTAAACAATGAAATCATGCAAAAATTATTTGCAAATATTAATGATGAAAACACTATCAAGGAAATTATAGTTAAAGATATTTCTGAGAGAAATTTCTTTAAATATTATAGAGTTTTAAATGAATACGGTTATGAAATGTCTGTTAGTGACACGGATGCAGAAGACTTGTTAGAAGATACTGCAGAACGTTGTAAAAAGTATAAATGTGAATTATGTTTGGAAACATTTTCTTTTAAATACGAAGTTTTCGACCATTTAAAAACTGATCATCCAAGGGAGGAAAGTCCTCTTAAATGTAAACAATGTAAAATAGAATTTGTTTGTATTGATATGCATGAAAAACATTTGCAAATACATTGCGAAAATCAGGATAAAGTAGTGTATTGCAACAATTGTCCAGGAAAGTTTGTTTGGGAGCAAAGTATGAAAAATCATAATTGTCCCTTACACACTACTAAGGGTCAGAAAAAATCGAAAGAAACAGAAGTATTGGAAAGTAGTAAATCGGACGAACAAATGGAGAAAAGCGAAAAATCAGATGGTTTTAAATCTCCCTTGAAAAATTCAGTTAAACCAAAAACTTCTAAAGTAATACATGAAACCATAATACGTTGTGCTCTTTGTGAAGAAAAGTTTAAAAAGCTTCAACATTTACAGCAACATATGCCTCTACATGCCGATGGTATAACTGGTATTAATTTTAGGGACTCTACTTATATAAAAGTCTTTAAAAATGCGGAATTAATTGACTATCCACTATGGCAACAACAAATTAAAGAAGCCTATAGCACATCTCAAATAAGTCAGTTTTATTTAGCTATCGATGAATACGGTAATGAATTGGATATTTCAGATTCAGATAGTGCAGACGATAATGATGTTACTGAAAATATAAAGAAACAATATACATGCGATATTTGCAAAGAAATGTTTCCTAAAAGAAAACTTATATTAAAACACCAACAAGAACGACATAATAATGAAGCACTTCCCTTTTCGTGCAAGAACTGTAGTCAACAATTTGTTAACTCTAATTTGTTACAACAACACTTAAAGAAAGTTTGCTCGAATGTTCATCGACAAAATGCTAAAAAATGCGAATATTGCGACACAAATTTTATATGGCCCGATAATCTAGTAAAGCACAAAGAAGTAAAGCATTTAAAATCATCGACAAATTTCATTGAAACTCATGCAAATATAGCTTCAACTTCAACGACAAATTCTATACCGGCGGACAAATTTTTCCCTAATGATGAATCATCAATACTTGCAGAAATCCCATTAGCTTCACCTTCACCTTGTGTTCTTTATTATTGTCTTATGTGTCCGCAAACATTCTATGCTATTGAAAATCTCAATGAGCACCTAGAGAGTCATCGTTTGACTCCAACAGATATTAACACCGTTGAAAGTATTGTTCATTCCACATGGTGGCCCAATGGTGAAAAGAAAATTATATGTAAAATATGTAATTTAACATTTAATACTATGGCCAACATAAAAGAACACTATAAAACAACAAATCTCGAAAATTCTTGTGCTAAACAGTATTCATCAGCAAATTACTCGATTACAAATGTAAAAGGTTTTGAATTGCATTTGGAACTGGATTCTGAAACAGATTTGGAAAATGAAAATAATGCAACTAACACAAAATCACTGTTTCCCTATAAATGTTGCATGTGCAATAAAACATTTAAGCGAAAATATCAAGTGGCCCAACACCAACGTTCTATGCACAATTATGAATTTCTGGAACTTAAATGCGAACGTTGTATTTTCCGAACAGTCTCACAAAAAGTTTTAGATTATCATAAAGCAACACAATGTTTTAATGTGGATAAAAAATACGAATGTGATCAGTGTAAATTTAAATTTATGTGGCAAGAAAATCTAGACAACCATAAAGCAACACTTCACACTCCAAAAGATATGAATGGCGCTTCATATGATTTAAATGCATCGGATCGAACTACAAAAAGCGAAAACAAAAATTTTGCAATTATAGCGGAACAACTCAAAAGTACTGGTTACGAAGAGTCGGTTGATGTTTCCAAATTGTCTAAAAACTCTGTAAAACCCACAACATCAAAGTCTAGTAAATATGTATGCCACATTTGTGGCTCCAACTTTACTAACAATAATAATCTTAAAGTACATATAATGAGACATAATAAGACTAACTTGCCATTCAAATGTGATTTTTGTGAAATGACATTTCCACGTAATGCCGATTTACAGGAACATCGTCGTACTCACACAGGTGAACGTCCCTTCAAATGTACACATTGCGATAAATCATTTTCACGTAAAAACAAATTAACCATGCACACACGATTACACACCGGTGAACTTCCCTATCATTGCACACTTTGTCAGAAATCATTTAATAGAGCCGAACACCTAAAACTCCATTTACTGGGCCATAAGGGAGACAAGCCCTATAAGTGTAATATATGTGGTAAAGGATTTATATGCGATTCATATCTTAACCGGCATCGTAAAGACGTGGGTCATAACGAGTTATGGTCAACGCCAGAAAACAATATAACCAATAAAGATGAGGAAGAGCAAAAAAAGATAAAGTCGAAAAAGCAATCATTATGTCCTATTTGTGGCATCTATTTGTCTCGTAACACCAGTGTGACTGCACACATGAGAACCCATACCGGTGAAAAACCACATAAATGTGATTTTTGTGAAATGTCTTTTGTCCGTAGATGTGATTTAACAGATCATCGACGTGTCCACACTGCCGAACGTCCCTTCCAATGTACATATTGTGAAAAAGCCTTCCCAAGACGTTGCCAATTAACTGTTCACATTCGTATACATACCGGCGAACGTCCTTACAAATGTACATATTGTAATAAAGCGTTTATACGATCGGAAAGTCTTAAATTACATGTGCGCATCCATACCGGGGAGAAACCATTTTCGTGCGAAATATGTAATTTAGCATTTTCATGTGCCCGTTATCTAAAAAAACATCGTATTGCAAAGGGTCATCATGAAGAAAAAAATGATAATTGTGGAAATTAA
- Protein Sequence
- MASDVKSSCFINGKLYKCRTCFDPGQSLYSLNDECNKTKTWRDLLKDVAQLQTSEDELLPSTVCSKCLDKLITFYDFILQIDNVNKKYMELLGNISDPLAVGRLNKNDIFSSRSTIVKPIEEELISEIKMEKEDVEEYVSCNNDKVDTFDVNIPTTAMELIWSPTAERNQHVNNDNCDESSLSSEETDWMPQKKSRNFLYGHMKEFYDKIRKVNNRYICPKCKKKFSTTSSCRRHLDKMHTKESSEDSSSSSSDECNDVPSTTTSQTKDDAVFEKIEKIDDRFVCPICKKTFTLHRNCRRHIQYFHLKEEITFYCGFCELTFTIRDYLNAHLKRIHPGETLETNMKKLERLFGERLYSKPTTWQCVECKLCSITFTTTKELRQHLENHYNLLYNIELNNEIMQKLFANINDENTIKEIIVKDISERNFFKYYRVLNEYGYEMSVSDTDAEDLLEDTAERCKKYKCELCLETFSFKYEVFDHLKTDHPREESPLKCKQCKIEFVCIDMHEKHLQIHCENQDKVVYCNNCPGKFVWEQSMKNHNCPLHTTKGQKKSKETEVLESSKSDEQMEKSEKSDGFKSPLKNSVKPKTSKVIHETIIRCALCEEKFKKLQHLQQHMPLHADGITGINFRDSTYIKVFKNAELIDYPLWQQQIKEAYSTSQISQFYLAIDEYGNELDISDSDSADDNDVTENIKKQYTCDICKEMFPKRKLILKHQQERHNNEALPFSCKNCSQQFVNSNLLQQHLKKVCSNVHRQNAKKCEYCDTNFIWPDNLVKHKEVKHLKSSTNFIETHANIASTSTTNSIPADKFFPNDESSILAEIPLASPSPCVLYYCLMCPQTFYAIENLNEHLESHRLTPTDINTVESIVHSTWWPNGEKKIICKICNLTFNTMANIKEHYKTTNLENSCAKQYSSANYSITNVKGFELHLELDSETDLENENNATNTKSLFPYKCCMCNKTFKRKYQVAQHQRSMHNYEFLELKCERCIFRTVSQKVLDYHKATQCFNVDKKYECDQCKFKFMWQENLDNHKATLHTPKDMNGASYDLNASDRTTKSENKNFAIIAEQLKSTGYEESVDVSKLSKNSVKPTTSKSSKYVCHICGSNFTNNNNLKVHIMRHNKTNLPFKCDFCEMTFPRNADLQEHRRTHTGERPFKCTHCDKSFSRKNKLTMHTRLHTGELPYHCTLCQKSFNRAEHLKLHLLGHKGDKPYKCNICGKGFICDSYLNRHRKDVGHNELWSTPENNITNKDEEEQKKIKSKKQSLCPICGIYLSRNTSVTAHMRTHTGEKPHKCDFCEMSFVRRCDLTDHRRVHTAERPFQCTYCEKAFPRRCQLTVHIRIHTGERPYKCTYCNKAFIRSESLKLHVRIHTGEKPFSCEICNLAFSCARYLKKHRIAKGHHEEKNDNCGN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -