Cruf014170.1
Basic Information
- Insect
- Chrysomya rufifacies
- Gene Symbol
- -
- Assembly
- GCA_014858695.1
- Location
- JACGTJ010003988.1:2493-11330[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.39 21 5.8 4.0 3 23 20 41 18 41 0.92 2 22 0.0061 0.33 11.5 3.4 2 23 343 365 342 365 0.94 3 22 0.00034 0.019 15.4 0.7 1 23 372 395 372 395 0.97 4 22 3.8e-05 0.0021 18.4 0.1 1 23 400 422 400 422 0.97 5 22 0.002 0.11 13.0 0.6 1 23 428 451 428 451 0.88 6 22 0.00079 0.043 14.3 1.6 1 23 457 479 457 479 0.99 7 22 8.9e-05 0.0049 17.2 3.6 3 23 487 507 486 507 0.97 8 22 0.0061 0.33 11.5 1.7 1 23 513 536 513 536 0.98 9 22 0.19 11 6.7 2.1 1 23 648 671 648 671 0.82 10 22 6.5e-05 0.0036 17.7 0.6 3 23 680 701 678 701 0.96 11 22 0.00033 0.018 15.5 0.5 1 23 708 730 708 730 0.97 12 22 0.00063 0.035 14.6 0.5 1 23 736 759 736 759 0.90 13 22 0.00083 0.045 14.2 1.6 1 23 765 787 765 787 0.99 14 22 7.2e-06 0.00039 20.7 1.4 3 23 795 815 794 815 0.97 15 22 0.013 0.73 10.4 1.4 1 23 821 844 821 844 0.97 16 22 0.032 1.7 9.2 5.7 1 23 956 979 956 979 0.95 17 22 6.6e-06 0.00036 20.8 1.3 1 23 986 1009 986 1009 0.98 18 22 0.0014 0.077 13.5 0.1 1 23 1014 1036 1014 1036 0.97 19 22 0.00063 0.035 14.6 0.5 1 23 1042 1065 1042 1065 0.90 20 22 0.00083 0.045 14.2 1.6 1 23 1071 1093 1071 1093 0.99 21 22 7.2e-06 0.00039 20.7 1.4 3 23 1101 1121 1100 1121 0.97 22 22 0.013 0.73 10.4 1.4 1 23 1127 1150 1127 1150 0.97
Sequence Information
- Coding Sequence
- ATGATACTTTGTGGTAATATATACGTGGATGAATTGAAAAATACATTCTTTTTATGTTGTGTACTGTGCAAAAAGAAATCTCGTCGGTATACCGAATTTACAAGTCACATAAAAGCGAAGCATAAAGATATAAGTGAAAAGGAAGCCACACCACCGTCATCGCAACGCCAATTTGCGAAAAAAATAAAACATGAAGACAGTAGCGACGAAGAGGATGATGATGAAGATTATGGAAATGAACGTGATCGTTTGGAGGATACTAAACCAGAAGTGGAAATTAAAGATGAAATGGATGTTGATGCATTAGAACAATTTACAGATGATATAAAATATGATGTACAAGAAATAGAGTTTACACCAACATTTTATCGTAAGAAACGTTATGTTAATGACTTTATCGAATTGTACAAAAGTCAGCCTGTTTTATGGGATTTAAATAACCCCCAATTTGAAGATCCAAAAGCACAAAAGGATGCTGAGCAAGCTATTATAAATGGCATGCAAAAGTTTAATATTTTCCTTAAACCAACAGCGCTAAAAGCAGCCATAAATCGAGTACACAAATATTGTGAAATCATAAAATCTGATATGGATAACGGTGATGCCAAAAAGATAACTGCAATTGCCAAGGGTTATTATGAAAAATGTGATTTCCTTAAAGATTTGCTGGCTAAAAAAGCTACACCAGAAACTGAAAAACAAAATCAATGGGATGATAATACTTCTAAGTTCATCGAAACATATTCTAAATTTTCCGTACTATACGATACTAAGAATCCTCTTTTCCATACTATCGACGAGAAGAATAAAGCTTTAGCTGAACTAAATGAAACTCTAATCACCAAACACAATATACATTTTAGCAAAGAGGATCAAACGAATGCCATTGAACAATTTCATGCATGGTATTATGATGCTAAACGACGTAAAGGTAAACGTAAAATCGATGAAAATAGTTGTGAGGATAAATATTTACAAATGTGTAAATTTATGCCGAATAAACAATTGAAAATGAGACAGCGCTTAACATGTCATTTGTGCGGTACTCTCTTCTATACGGAACACAATTTGAAATTACATCTGTTTAAGGCACATCAAATTGGAGATTTACCCTTTCAGTGTGAACAATGTGGCCTAAAATTCGATTCGAAATTGTATTTAAGAGTGCATACATTACGAGTTCATGTTGGGAAACAGTTTGCCTGTGAATATTGTGGACGAAAATTTGCCATAAAGCCAGAACTGAATACACACATTAAAATACATACCGCGGAAAAGCCTCATGTTTGTGAGCTATGCGGTAAATCGTTTAGATTAAAGACACAATTGGGTTATCATGTAACCGCAATACACACCAAAATACGTGCATTCAAATGTACCATGTGTCCCAAGGACTTTTTAAAGAAACGTGATCTTACCGATCATATTAAATCCCATCTGAATATACGTGACAAAATCTGTGAAACTTGTGGCAAAGGATTTTCAAATTGTCATTCTCTTATTAGACATCGTCAAATACATTCGGCCGTCAAGAAATACGAATGCAAACTATGTGATGCCAAATTTCATCAATTTGTGGGTCTCAATGGTCATATGAAACGTACACATAATATAAAACCTTTAACGCTTAAGAAATGGGATGAAAATACTTCAAAATTTATTGAACATTATGCAAAATTTCCAATTCTTTACGATGGAGAACATGCATTATATGGCAATTTAGATGAAACATTAAAAGCTCAACAAAACCTAACAGCCGCTCTATTAACAGAACACAATATAGATATGAACAATGAACTTCTAACACGTGCTATAGATCAATTACACTCATGGTATTATGAAGCGAAATGGCGTAAAAAGAAACAAGCTAAATTACCCAAACCCGAAGAGGATTATTATCATAAATGTAAATTTTTACCAGAAAAACGTGTAAAATCAAAATATTTCTGTCATGTATGCAAGAAAAGTTTTAATGTTGAAAATATTTTAAGGGGTCATCTCTATAGGAATCATCAGATAGGTGAATTACCCTATGGATGTGAAAAATGTGGCAAAAGATTTGCATTAAAATACACATTACAAACACATATACTAAGAATGCATATTGAAAATTCTCGTAAATATCCTTGTACATTTTGTGGAAAAATGTTTGCTGTCAAATCGGAATTGAAATTTCACACAATGGTGCATACGGCAGAAAAGCCACATGTCTGTGAATTGTGTGGCAAAGCTTTTAGAATAAAGACACAATTACGTTATCATGTAACGGCTATACATACAAAAATTAGAGCCTACAAATGTACTATGTGTCCTAAGGACTTTCTTAAGAAACGTGATTTAACAGATCATGTTAAAACTCATTTGAATATACGTGATAAAATATGTGAAACATGTGGTAAAGGTTTCTCCAATAGTCATTCATTAATACGACATCGTCAAATACATTCAGAAGTTAAACGTTATGCGTGTAAATTATGTGATGCTAAATTCCATCAATTTGTAGGTCTCAATGGACATATGAAACGTACACATAATATTAAACCTTTATTGCTTAAACAATGGGATGAGAATACTTTAAAATTCATTGATCAATATGAAAAGTTTCCGGTTCTTTATGATGGCGAACATAAACTGTATGGCAATTTTGATGAAATCCAAAAAGCACAACATAGTTTAACATCTGCTCTAATAACAGAACACAATATAGATTTAAAAGATGAAATTCTAACTCGTGCTATAGATCAATTACACTCATGGTATTATGATGCCAAATCGCGTAAAAAGAAACAAAGTAAATTATCCAAATCGGAAGAGGAATATTATAAGAAATGTAAATTTTTACCAGAAAAACGTTTAAAAACCAAATATTATTGTCATGTATGCAAGAAAAACTTTAATATTGAACACAATCTAAAGGGACATCTTTTTAGATATCATCAGATTGGCGAACTACCCTTTCAATGTGAACAATGTGGCAAAAAATTTGAACTAAGATCAACGCTGCAAACGCACATACAAAGAATGCATGTTAGTCGAAAATTTCCCTGTGGTTTTTGTGGTAAACTTTTTGCTATTAAATCTGAATTAAAAGTTCACAATATGGTGCATACAGCAGAAAAGCCACATGTTTGTGAATTGTGCGGCAAAGCTTTTAGAATTAAAACCCAATTGCGTTATCATGTAACGGCTATACATACAAAAATTAGAGCCTACAAATGTACTATGTGTCCCAAGGACTTTCTTAAAAAACGTGATTTAACAGATCACGTTAAAACACATTTAAATATACGTGACAAAATATGTGAAACATGTGGCAAAGGTTTCTCCAATAGTCATTCATTAATACGACATCGTCAGATACATTCGGAAGTTAAGCGTTACGCTTGTAAATTATGTGATGCTAAATTTCATCAGTTTGTGGGTTTAAATGGACATATGAAACGTACACATAATATTGTTAAAAAAGATTCATAA
- Protein Sequence
- MILCGNIYVDELKNTFFLCCVLCKKKSRRYTEFTSHIKAKHKDISEKEATPPSSQRQFAKKIKHEDSSDEEDDDEDYGNERDRLEDTKPEVEIKDEMDVDALEQFTDDIKYDVQEIEFTPTFYRKKRYVNDFIELYKSQPVLWDLNNPQFEDPKAQKDAEQAIINGMQKFNIFLKPTALKAAINRVHKYCEIIKSDMDNGDAKKITAIAKGYYEKCDFLKDLLAKKATPETEKQNQWDDNTSKFIETYSKFSVLYDTKNPLFHTIDEKNKALAELNETLITKHNIHFSKEDQTNAIEQFHAWYYDAKRRKGKRKIDENSCEDKYLQMCKFMPNKQLKMRQRLTCHLCGTLFYTEHNLKLHLFKAHQIGDLPFQCEQCGLKFDSKLYLRVHTLRVHVGKQFACEYCGRKFAIKPELNTHIKIHTAEKPHVCELCGKSFRLKTQLGYHVTAIHTKIRAFKCTMCPKDFLKKRDLTDHIKSHLNIRDKICETCGKGFSNCHSLIRHRQIHSAVKKYECKLCDAKFHQFVGLNGHMKRTHNIKPLTLKKWDENTSKFIEHYAKFPILYDGEHALYGNLDETLKAQQNLTAALLTEHNIDMNNELLTRAIDQLHSWYYEAKWRKKKQAKLPKPEEDYYHKCKFLPEKRVKSKYFCHVCKKSFNVENILRGHLYRNHQIGELPYGCEKCGKRFALKYTLQTHILRMHIENSRKYPCTFCGKMFAVKSELKFHTMVHTAEKPHVCELCGKAFRIKTQLRYHVTAIHTKIRAYKCTMCPKDFLKKRDLTDHVKTHLNIRDKICETCGKGFSNSHSLIRHRQIHSEVKRYACKLCDAKFHQFVGLNGHMKRTHNIKPLLLKQWDENTLKFIDQYEKFPVLYDGEHKLYGNFDEIQKAQHSLTSALITEHNIDLKDEILTRAIDQLHSWYYDAKSRKKKQSKLSKSEEEYYKKCKFLPEKRLKTKYYCHVCKKNFNIEHNLKGHLFRYHQIGELPFQCEQCGKKFELRSTLQTHIQRMHVSRKFPCGFCGKLFAIKSELKVHNMVHTAEKPHVCELCGKAFRIKTQLRYHVTAIHTKIRAYKCTMCPKDFLKKRDLTDHVKTHLNIRDKICETCGKGFSNSHSLIRHRQIHSEVKRYACKLCDAKFHQFVGLNGHMKRTHNIVKKDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -