Cruf002970.1
Basic Information
- Insect
- Chrysomya rufifacies
- Gene Symbol
- lov
- Assembly
- GCA_014858695.1
- Location
- JACGTJ010002784.1:4215-13371[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9 1.8e+04 -5.0 1.2 3 11 193 201 192 201 0.81 2 2 1.4e-18 2.8e-15 55.7 0.0 1 44 408 451 408 452 0.96
Sequence Information
- Coding Sequence
- ATGGAAGAAGATGATGAACAACTAGCTGCCCGAGATAGTGGAAATGATAGTCATGAACAACCAGAGGATTTAATGTTAAATGATAAATCTTTGGATAATAAGTTTGATAACAACAATTCTCAAACGGAAGCTTTAAACAATTCAGAGGATTTAGAGGATGATGAGAGAGAAGAACGAGAACCTGAGGAGGTAGATGCCGAAGAAGAGGAAGAAGATATAGAGCAATTGATTCATCATACTAATGAGTTAAATAGAAGACGTAAATCTGCCTTGTCCATGAATTCAGACGGTCCAGAAGATTTGTGCACCACCAAAAAAGACAACGATACTAGCGGCCATCATTCGGCCTCCGATAATGAAGACTCTTCCAATAATAACAATAGCTCAAAGTTGAACAATAACAATCGCATAGTTTTGTCTCTTAAGGATATTAGACAATTGAATAAACCCTCCTCCTCTTCCACACCCAATTCCTGCACAAATAGTTTAAATCCTTTTTCCTCAGCCAGCCTTAGAGATTTAAGGTTGGATCGTGAAAGAGCTTTGGAGACGCAATGTAAAATGGAAGTTTTGGAAGCTCAAATGCAAGCAGCAGCTGAAGCTGCTGCAGCGGCTGCTGCTAGAGGTGAAAATCCTTTTCAACATATGGAACATCAAATGGATTTGTCTTTGGCAGCAGCAGCCGCCGCTGCTGCTGTTTCTCAACAACATAACCGAGAAAGAGATCAAGCGTTACAAAGAGAACATCGAGAAATGCAGCAACAACATAATGCTTATGCCAATAGTATTCTAGGACAAATGGGTATGCCTGGCATGCCACCTTTTGGTCCGGCCACAGGTGCACCACCAGCTCCCGGAGGACCCTCAGCACATGAACGTTTAGAAGAATCCATGAATCGTTTAAGTAAAGAATTTACACCCACATCACCCATGAGCCTGCCACCACACTACAATCCTCAAGATGGACCACCACATCCACCTTCACCTTTGCCCTTTCCCGGTATGTCTTCATTGGCGTTAACTCCGCCGCACATGTTTGGTTTGGACTCACCATTGGGCTTATTTCCACCTGGCATAGATCCTGGCAAACTTTATAATCCCTTAATGGAAATGTCCGATCCTAGAGGTATGCCAGGTGAGGCGCCGCCCTTTCTCAAAAAGAAAATGCCTAGACCAAAAGGTCAACATTCAGCGCCCCGTGGCGGACCACCACGTTCTTGGACAAATGCCGAATTAACCGAGGCCTTGCAACATGTTTGGAATAAGAAAATGACCACTTCTCAAGCATCTCGTATCTTTGGCATACCCTACAACTCGTTGCTTATGTATGTTAGAGGCAAATATGGTAAATCTTTAAAATTGGAACAATTACGCAAAGATTGTATTAGTGGTCCACCTTTGGAAATGCTACAAATGGGCATAAGTTCCGGTTCGGGTAAAAATTCTGGAGAAACTAAAGAACAAAGAGAGGCTCGCAAAGAAGCACAACGTAATGCCAATCAACATCCGCCCAATGATATGGATTTATCCGGTCCTTTGGGGGGACCTGGACCTAGACCTTCCAGCTCAGAACCAGATTTATTGGGAGGACCTAATGCTTTGTTTAATCCCTTTAATCCCCAAGGATTTTATCCCGATTTTCCAGGAGGTTTTCCTGGTTTACCTTTAAGTATGTTAAATTTGCTGCCACCCTCTGAAAGACAACATGCTGCCGCCGCAGCAGCTGCCATGCATCATTCTATGGGTTTAGATGAGGACTGTAAATCTGATCGCTCTAAACAATCCTCCAATATGGATGATGAATTCTCTTTAAGTCGTGAAGAACGCCGGCATTCTGATATATTAAATAATTCCTCGTCAACACCCTCCTCTACGGCGCAAAATGGTGCTGTACAAGATTGA
- Protein Sequence
- MEEDDEQLAARDSGNDSHEQPEDLMLNDKSLDNKFDNNNSQTEALNNSEDLEDDEREEREPEEVDAEEEEEDIEQLIHHTNELNRRRKSALSMNSDGPEDLCTTKKDNDTSGHHSASDNEDSSNNNNSSKLNNNNRIVLSLKDIRQLNKPSSSSTPNSCTNSLNPFSSASLRDLRLDRERALETQCKMEVLEAQMQAAAEAAAAAAARGENPFQHMEHQMDLSLAAAAAAAAVSQQHNRERDQALQREHREMQQQHNAYANSILGQMGMPGMPPFGPATGAPPAPGGPSAHERLEESMNRLSKEFTPTSPMSLPPHYNPQDGPPHPPSPLPFPGMSSLALTPPHMFGLDSPLGLFPPGIDPGKLYNPLMEMSDPRGMPGEAPPFLKKKMPRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRKDCISGPPLEMLQMGISSGSGKNSGETKEQREARKEAQRNANQHPPNDMDLSGPLGGPGPRPSSSEPDLLGGPNALFNPFNPQGFYPDFPGGFPGLPLSMLNLLPPSERQHAAAAAAAMHHSMGLDEDCKSDRSKQSSNMDDEFSLSREERRHSDILNNSSSTPSSTAQNGAVQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -