Cruf017042.1
Basic Information
- Insect
- Chrysomya rufifacies
- Gene Symbol
- bab2
- Assembly
- GCA_014858695.1
- Location
- JACGTJ010014278.1:5335-8076[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 9.3e-08 0.00018 21.1 0.0 7 39 413 445 410 448 0.88 2 4 2.2e-14 4.3e-11 42.3 0.0 5 44 465 504 462 505 0.93 3 4 0.011 22 4.8 0.0 27 37 534 544 530 550 0.89 4 4 5.6e-15 1.1e-11 44.2 0.0 4 41 573 610 573 612 0.92
Sequence Information
- Coding Sequence
- ATGAACAATTTAAAGTGGATGGGCCATTCGGCCACAATATTAGATATACACAAAAATCTACGAGCCGATTTGAAAAGTTGTGATGTGACTCTGGTGGCCAAGGGCCATAGTGTTAAGGCTCATCGCTTTGTTTTGTCATCATGTAGTGATTTGTTACGTTGCCTGCTAACCGATGTACCCATTGGTCAAGAGTGTTGTGTAATGGTGCCCGATATAAAAGGTCATTTGTTGGATAGTGTTTTGGCATTTATATATTTGGGAGAATGTTCGTTATCCTCCAGCAATTTATCGGAATTCTTAGAAGCCATTAATGTAATGGGCATAAAGAGTGCTATAAGTTTTGAATGTAATACAAATGGCATGCAAACATCCCAAAATACCAACAGCAATAACTCTAGCAGCATTGGTCTCGACAACAATAGCTCTTTAAACAATAGACCAGTAAACATAGCAAGCTCGTCGGATAGTTTGCAACAACAAGAAGAAATAATTGAAAGCGATAATGTTATGCATACGGATCCAGTACACAACGCCACCAGCAATGTTAGTAGTGTAAATAATAATTCTACTACAACTAGAGAATTGGATTTTTTAGATGTTTATCATGAACCTCAACATAAAATCACCTACTCTATCGAACATGTTCCGGGCTCAACGGCTGGTAATGAATTTATTTTAACCGAAAACTCTGGTACTTTTACATTAACTCATAGCGGTAAGTTGGAACAAACAACATCAGCTACAGAGTCATCCAACATGGAAGTTACCGAAGAAGATGAAGCTTGTGAAGCTCACATTATAGAGGAGTATAGTAGTGGTGATGAACCTCTAATACAAATAGGTGATACAACGACACAGGAACAACATTGTGTTGCAGTGGCTCATCAGTCTAATGCAACACAACAACATCATCTCCATCATGTTCAAGCCTCAACATCATTAAGTAATGTAGTACCCTCGACCTCAACAACTACCACAACATCTATTATACAAGTGAAACCCAAAATAAAAACTATTAAACTTAAACATCAACCTCCCGCCACACAGCAAATCATAACCAAAATGGAAGAATTGCCAGAAGAAACGGCTAATGATGATCCCATATCTATATTACAAACATCCAGTGAAAGTTTTACTCTACTCAAAGATGGAAGCATGGTGTCTACCGGCAATACTAGTCACGATGAATCTACAGATTTTTCTCTCAACAACTCTACCGTTTCATCTGCAGTTGATTTAGCCTATCAAGCGATGATTAATGAAGGTATGTCATTGCCAAAGGCTGCAGATAAATTTAGTGTTTCCAAAGCAGAATTATGGCGTCGTGTCCGTAGTACGGGTGTAGATCAATTGAATAAACCTATTAAAATGGATCCCGATAAGATTGATGTCATAGAATTGGCCAGCAAAGCAGTTATCAATGAAGGTTTATCTTTGCAAAAGGCCGCAATACGTTATGATATTTCGAAAACGGTGCTATGGCGGCGTGTACGCAAACATCCTCAGTACATGAAAACGGCTAGAGAAAATCCCATAATAGCCAAAGCTTATGAACGTTTGAAATCTGGAGAATCTCTGAAAAGCATTTCACAAGATTTAGATATACCCATGTCAACATTACATCGTCACAAAGTACGCCTATCGCAAAGTGGTCAATTGCCTGATTTTGTTACTTGCAAAAAACGTGATAGCATGTCTAAAGATGATTTGAAACTAAAACTTTCCAAGGCGGTGCATGCTTGTGTGCATGAGGGTATGTCGCAAAATCATGCAGCTAATCTATTTCAAATTTCCAAAAGTACATTATGGCGACATTTGCAAAAACGTGTGGCAGAAGCTGAGGCAGCAGAGACTGAGTCAATGGGTGATGAAGAAGAAATTAAACAAGAAGTTATACTCTCATAA
- Protein Sequence
- MNNLKWMGHSATILDIHKNLRADLKSCDVTLVAKGHSVKAHRFVLSSCSDLLRCLLTDVPIGQECCVMVPDIKGHLLDSVLAFIYLGECSLSSSNLSEFLEAINVMGIKSAISFECNTNGMQTSQNTNSNNSSSIGLDNNSSLNNRPVNIASSSDSLQQQEEIIESDNVMHTDPVHNATSNVSSVNNNSTTTRELDFLDVYHEPQHKITYSIEHVPGSTAGNEFILTENSGTFTLTHSGKLEQTTSATESSNMEVTEEDEACEAHIIEEYSSGDEPLIQIGDTTTQEQHCVAVAHQSNATQQHHLHHVQASTSLSNVVPSTSTTTTTSIIQVKPKIKTIKLKHQPPATQQIITKMEELPEETANDDPISILQTSSESFTLLKDGSMVSTGNTSHDESTDFSLNNSTVSSAVDLAYQAMINEGMSLPKAADKFSVSKAELWRRVRSTGVDQLNKPIKMDPDKIDVIELASKAVINEGLSLQKAAIRYDISKTVLWRRVRKHPQYMKTARENPIIAKAYERLKSGESLKSISQDLDIPMSTLHRHKVRLSQSGQLPDFVTCKKRDSMSKDDLKLKLSKAVHACVHEGMSQNHAANLFQISKSTLWRHLQKRVAEAEAAETESMGDEEEIKQEVILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00199788;
- 90% Identity
- iTF_00331630;
- 80% Identity
- iTF_00331630;