Basic Information

Insect: Chrysomela aeneicollis
Gene Symbol: -
Assembly: GCA_027562985.1
Location: JARUHR010000011.1:221676-233829[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.16 24 7.1 1.5 3 23 219 239 217 239 0.97

2 16 0.00015 0.023 16.6 2.1 1 23 248 271 248 271 0.98

3 16 0.33 50 6.1 5.9 1 23 278 300 278 300 0.98

4 16 0.019 2.9 10.0 2.9 1 20 306 325 306 326 0.96

5 16 0.014 2.2 10.4 2.2 1 23 336 358 336 358 0.98

6 16 0.0037 0.56 12.2 1.8 2 23 368 389 367 389 0.95

7 16 0.34 52 6.0 0.6 2 23 400 422 399 422 0.95

8 16 5.8 8.9e+02 2.2 0.1 1 23 443 466 443 466 0.68

9 16 0.065 10 8.3 3.0 2 23 479 500 478 500 0.96

10 16 0.16 24 7.1 1.2 1 23 509 532 509 532 0.94

11 16 0.58 89 5.3 4.2 1 23 537 560 537 560 0.97

12 16 1.8 2.7e+02 3.8 0.5 1 23 567 589 567 589 0.88

13 16 0.012 1.9 10.6 3.8 2 23 595 617 594 617 0.94

14 16 0.4 61 5.8 0.6 2 23 636 658 635 658 0.93

15 16 0.0079 1.2 11.2 0.9 1 23 666 688 666 688 0.98

16 16 0.3 45 6.2 3.0 1 23 697 720 697 720 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.16	24	7.1	1.5	3	23	219	239	217	239	0.97
2	16	0.00015	0.023	16.6	2.1	1	23	248	271	248	271	0.98
3	16	0.33	50	6.1	5.9	1	23	278	300	278	300	0.98
4	16	0.019	2.9	10.0	2.9	1	20	306	325	306	326	0.96
5	16	0.014	2.2	10.4	2.2	1	23	336	358	336	358	0.98
6	16	0.0037	0.56	12.2	1.8	2	23	368	389	367	389	0.95
7	16	0.34	52	6.0	0.6	2	23	400	422	399	422	0.95
8	16	5.8	8.9e+02	2.2	0.1	1	23	443	466	443	466	0.68
9	16	0.065	10	8.3	3.0	2	23	479	500	478	500	0.96
10	16	0.16	24	7.1	1.2	1	23	509	532	509	532	0.94
11	16	0.58	89	5.3	4.2	1	23	537	560	537	560	0.97
12	16	1.8	2.7e+02	3.8	0.5	1	23	567	589	567	589	0.88
13	16	0.012	1.9	10.6	3.8	2	23	595	617	594	617	0.94
14	16	0.4	61	5.8	0.6	2	23	636	658	635	658	0.93
15	16	0.0079	1.2	11.2	0.9	1	23	666	688	666	688	0.98
16	16	0.3	45	6.2	3.0	1	23	697	720	697	720	0.94

Sequence Information

Coding Sequence: ATGGGGAATGGTGATGAGAAAGTCTGCAGAGTTTGTTTCACGAAAATCAAGGATAATTTATATAATGTTATGGAAGAAATTCATAAAGAAATGATGGAAGTGGTAGTTAAGAAAATTGATTGGGATTTGTCTGTTGATCCCGTGATATGCGAACAGTGTCTAACTAAATTGAACGATTTCTTTGCTTTCAAATCCAACTGCATTTATGCAGAAGACTCATTGACGCCATACATCACCGAACAACAACTCAAATATCCGAAAGAAAAGAACGGCCATTGTAAAGAGGAGTTCAAATTATCTCTAAATGCAGAGCACCATTCGTGTCGTTTATGTATAACCACAATTGAAGAAAAAGAAATACGATTGAGTGGAGAAGACCAGGACAAGTTCAAGAAATATTTACCAGAAATTAAAGCTTGTTCATATCTCAGTGACAAAGTTTGTTCAGCCTGTTTCGAGCTACTGCAAAAATTCtatgaattttgcgaaatgtGCACGGAAAATGACAACAAACTAGAAGCATACTGTAAGACTATAAGAAGACGGGACAACAGGCGAGTAGCTTTGCTTGCGTTTTTGGAGTGTACAGGAGAACTTGAGACTACATCAGAAAGCAACTTCGAAGTACGACAAATGCCAGATGGAAGATACGGTTGTCCGGTTTGTTCATTCACCACCAAACACTTGCCATATTTGAGATTACATAAATCATCTCACGAAAAAGTACCCGATGTTAAATTGTACAAGTGCCCAGAGTGTCCGTTAGAAACTAAATATGAGGATTGTCTGAGGAAGCACATAAAAACAAAGCATTCCCCTGACGCGGAGATATTCGAATGTCACACGTGCtctttcaaaacaaaacacaaaATATCAATCAGAAGACATGTACTCATGCACAGTGAAACAAAAGTGTACAAATGCGAGAAATGCGATTTCCAAACCAGACACAGTGCGACACTGAAAAACCATCATGTATGTAAGGTGAACAAACCAAAAATAACCTACCGTTGTGAATTATGTCCTTACAAGACACATCGCAGGGGACTACTAAAGGAACATTCGAAGATCCACCAGACACCAACGGAGGCGGAACTGCTGAAATGTAAATTTTGTGAATTCAAAACAAAGAGAAGAAGCGCTTTGAGAAAACACGAGGCGATTCACGACAGAGACGGTGAGAAACCGTCTATTCTTAGGTGCCCGCATTGCGTCTACGAAACATTTGCTTTAGCATCCCTCAAATCGCACCTTCAAAAGATTCACGACCACGTCAAACCACAGAACTTCAAGGAAAAGTGCCTCAGCCAGCGAGCAATCCGCCATTTTGAATGCCCGCTGTGCGATTTCGTTGCCCTGACCGGAAACGGTCTTTCCACGCACGCAAAGACGATTCATGGACTTGTGAAGCCAAGTTTCGGACAGAAGAAGTTAAAGTGCAGCACGTGTGACTACCAGACTGGCCACAAAACACAGCTGAAACTTCACGAGTTGAAACACAAAGATGTGCCTGACGAAGAAATGCACAAATGTGATAAATGCAATTACCAATCGAAATGGGCTAGTGGGCTGAGGAACCACCTGCAGGCTCTTCACAGTGACGTGACCTTCAAGTGTCACTCGTGTCCATTTGAAACCAAACACAGGAAGGCCATAAACCAGCATGTCAACATCCGTCATGGTGTCAATAAGAAGGAATACAAATGCGATAAATGCTCTTTCACATCTAATTGGAAAGCTAGTATCGAAAATCACCAAGTGGTACATGGAGAGGCAGCTCTCTGTTGCACCAAATGCGATTTCAAAACgagGTACCCGAAGAGTCTCAGAAACCACCTGCGCGACCTGCACAAATCCTCAACGACCACCACCGTGAAGAAAGCCGCAGAACCGAAGAAGACCTTGAAGTGTCCGTTGTGCCCCTTCCAAACTGTTCACCAAAGAGGGTTGTGGGGGCACACTTACATGAAACACACGGACACAGTGAAGGGGATTTATAATTGCGACAAGTGCTCATTCTCGTCGAAAAAGAGGGGGCTTTTTATAGCACACCAAATGATCCATCGAGATATTCCAGTGGATGAATTGTTCTCGTGTGGTTTTTGCGAATTCAAAAGTAAATATAAGAGATCGCTGCGGAATCATGTGAGTAACAGGCATCCGAATGAATGTGAAAAGAGCGACTAG
Protein Sequence: MGNGDEKVCRVCFTKIKDNLYNVMEEIHKEMMEVVVKKIDWDLSVDPVICEQCLTKLNDFFAFKSNCIYAEDSLTPYITEQQLKYPKEKNGHCKEEFKLSLNAEHHSCRLCITTIEEKEIRLSGEDQDKFKKYLPEIKACSYLSDKVCSACFELLQKFYEFCEMCTENDNKLEAYCKTIRRRDNRRVALLAFLECTGELETTSESNFEVRQMPDGRYGCPVCSFTTKHLPYLRLHKSSHEKVPDVKLYKCPECPLETKYEDCLRKHIKTKHSPDAEIFECHTCSFKTKHKISIRRHVLMHSETKVYKCEKCDFQTRHSATLKNHHVCKVNKPKITYRCELCPYKTHRRGLLKEHSKIHQTPTEAELLKCKFCEFKTKRRSALRKHEAIHDRDGEKPSILRCPHCVYETFALASLKSHLQKIHDHVKPQNFKEKCLSQRAIRHFECPLCDFVALTGNGLSTHAKTIHGLVKPSFGQKKLKCSTCDYQTGHKTQLKLHELKHKDVPDEEMHKCDKCNYQSKWASGLRNHLQALHSDVTFKCHSCPFETKHRKAINQHVNIRHGVNKKEYKCDKCSFTSNWKASIENHQVVHGEAALCCTKCDFKTRYPKSLRNHLRDLHKSSTTTTVKKAAEPKKTLKCPLCPFQTVHQRGLWGHTYMKHTDTVKGIYNCDKCSFSSKKRGLFIAHQMIHRDIPVDELFSCGFCEFKSKYKRSLRNHVSNRHPNECEKSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -