Basic Information

Insect: Chrysomela aeneicollis
Gene Symbol: -
Assembly: GCA_027562985.1
Location: JARUHR010000004.1:1487136-1494173[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00047 0.071 15.1 0.0 1 23 378 401 378 401 0.96

2 15 2.1 3.2e+02 3.6 2.3 1 21 407 427 407 428 0.92

3 15 0.0038 0.58 12.2 3.7 1 23 523 546 523 546 0.96

4 15 0.016 2.4 10.3 4.2 2 23 553 575 552 575 0.95

5 15 0.0016 0.24 13.4 2.3 1 21 665 685 665 686 0.95

6 15 0.00075 0.11 14.4 2.0 2 23 698 720 697 720 0.92

7 15 0.95 1.4e+02 4.6 0.3 1 23 723 746 723 746 0.94

8 15 0.071 11 8.2 0.3 3 23 753 773 751 773 0.95

9 15 0.16 25 7.1 0.1 1 23 777 800 777 800 0.97

10 15 0.058 8.8 8.5 0.4 2 23 807 829 806 829 0.95

11 15 0.026 3.9 9.6 0.6 2 23 838 860 837 860 0.95

12 15 1.1 1.7e+02 4.4 0.0 3 19 867 883 866 883 0.97

13 15 5.2 8e+02 2.3 2.6 2 23 958 980 957 980 0.94

14 15 1.9 2.9e+02 3.7 0.2 2 23 987 1009 986 1009 0.88

15 15 0.87 1.3e+02 4.8 0.9 1 23 1022 1044 1022 1044 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00047	0.071	15.1	0.0	1	23	378	401	378	401	0.96
2	15	2.1	3.2e+02	3.6	2.3	1	21	407	427	407	428	0.92
3	15	0.0038	0.58	12.2	3.7	1	23	523	546	523	546	0.96
4	15	0.016	2.4	10.3	4.2	2	23	553	575	552	575	0.95
5	15	0.0016	0.24	13.4	2.3	1	21	665	685	665	686	0.95
6	15	0.00075	0.11	14.4	2.0	2	23	698	720	697	720	0.92
7	15	0.95	1.4e+02	4.6	0.3	1	23	723	746	723	746	0.94
8	15	0.071	11	8.2	0.3	3	23	753	773	751	773	0.95
9	15	0.16	25	7.1	0.1	1	23	777	800	777	800	0.97
10	15	0.058	8.8	8.5	0.4	2	23	807	829	806	829	0.95
11	15	0.026	3.9	9.6	0.6	2	23	838	860	837	860	0.95
12	15	1.1	1.7e+02	4.4	0.0	3	19	867	883	866	883	0.97
13	15	5.2	8e+02	2.3	2.6	2	23	958	980	957	980	0.94
14	15	1.9	2.9e+02	3.7	0.2	2	23	987	1009	986	1009	0.88
15	15	0.87	1.3e+02	4.8	0.9	1	23	1022	1044	1022	1044	0.95

Sequence Information

Coding Sequence: ATGGAAACGAAGTTGTGTCGAATTTGTGGAAAGTTGGGTCAAAActttatacatattttcaaaacggAAGGGCTTAGGAGCAAGATCGAAACATGTTTGCCAATAATAGTGTCTCCTTATTGCCTTTTGCCGGACGCCATATGTGAGGAATGCACTGCCACTGTGGACAACTTCTATACCTTCATCAAAAACTGCTTGCAAAACATCATCATCCTAGAGGCCCAGTACGACATACGCGAGTCTTGTCTCAAGTCCAAGCAGAAGAGGGACAAAGGTTCCCACGTCGACTTTGGTTTCCAAAAATCCAACAAGGGGGTGCAGACTGATGACTTCCTGGATGTATTGTCCGGGAGGCATGCGGATTTGAAGGAGCTCGGCTCGAGTTTACCCCAAACGCTCGCGTTTTTAAAGGAAGAGGCGCCGTTCACCAAAAAGAGTTCCTCCCTGGTTGACTACGAAGTCGAATCGGACTCTAGCCTTGACGAGAACCTCTGCAATGGCAAGGTCGAGCTGAGTGAAGAACGGCAATCCCTggataaaatcacgaaattcgtgGACTCGATCACTAGCAGGGAGGTGTGGCCCAAAAAACTACGCTGTTACTCTCTGGGCAGCGACTTGATCAGCGAGATAACGCAGAGGAGGAACTTGAAGAGGAAAAGCGATGTCATAGAGGTCCACAAGCCCAGGATTTACTCGGGTCTGAACAAACGAAAGAACAAGGTGCCAAAGAGAATAGATACCCAAGACGTTGGTGGAGCAATAGCCAGCTTCCAGACGCCGGATGAAATCGATGAGCCGCCACCACAGGGGACTGAAAATTATGACACCGATATCCAGACTGCTACACCATCCCAGGATGAAAGATTGCCAGCAACGGTGTTGCTCCAGACCTGCCTGCTTTGCGAAGCCCAGCTCGCAGGCCCGGCAGCGCTGAATTCGCACGTGTTTGAGGTGCACGGCATCGATATGGTCTCGGAGGCGGCCTCCCTCGGCTCGGGGGACTCTCTGCCGGAGAAGAGCAAGAAGAAGATCCCGAATCTCGTCAAGATCTCGGATCTGAAGAGGAACGATCCAAACGATGAGACCCTCGAAAGGATGAACGAGGACCCCCCAACGCTGCAGCCGAGCTTCGTGTGCCCCAACTGTCCCGGCGACTTCACCAGCAAGCCGGACCTGATGGCGCACCTGCGCGCCAGGCACCCCGAGCTGGCCGCCTACCTGTGCGGCATCTGCATGCACCAGTGCACCTCCGCCGCCCACCTCACCCACCACCTGCAGGGGTGCGCCCAGCAGCACCCGCCCGCCGCCCGCTACGTGTGCCGCGTTTGCCACCACGGCGAAGATAGCCTCAAGGCGCTCGAGGGTCACGTGCTCGAGCACGATTTCCTGCTCGACGCCTGTCGCCGACAGCTGCGCGTCTTCGACCCCGAGGACTACATCCAGGAAAACGGCGAGGCGCCGGAAAATGGCGGCCTGAAAGGTCCGGGTTGTGCCGAGTGCGGTCTCGGAGAGTTCCGGTCGTTCGCCGAGTTTAGCGCTCATAGGCGCGACCGGCACTCCATCTTCCACTGCGACCTCTGCGCCAAGTTCTACGGAAGAAACTCGCATCTGTGGAAGCACGTCAACAGGTTGCACAAGGGTCACCCGAGCATCACGTGCCAGCTGTGCCACAAGACGTCGGCCTCCAAGTACCACCTGCTGCAGCACTTCAACAAGGCGCACTCGAGCAGGGGTGCCCAAAGCGAGGACTTTATGTCGCAGAAATTCTCTGCTTTCGACTTCCAGTCGGTGAAGCAGAGCTTCATGCGGCAGGAGCTGTCGGAGGCGGTAAAGGATGCCGACTCGGACGAGCCACAGTGGGAGGAGGAAGAGGAGGAGGAGCTGGTGGCGATGGAGGAGCCGGCGTCGGCGCCCAAGGAGATCGACTCGTCGCACAACCTCTACACGAACATCATCACCAACTACACGCCGCCGCCCAACGAGGGCGACTACAAGTGTCCCAAGTGCTCGAAGGCGTTCCAGAAGAAGCTGCTGCTGAAGAAGCACAAGAAGAACTGCCGGCCGCGCAACCAGAAGGACCTGCTGACGCGCTGCAAGACTTGCTCGCGCACCTTCAAGGACAGGCAGAGCTTGGCCAAGCACCTCGTCAACTACCACTCGGAGTACGTTTGCGAGATATGCGGTGGTAAGATGCAGAGCAAGTGCGAGATTGTGGCGCACATACGCTCGCGCCATCCCGGCTGTCACCTCTTCTGCGGCATGTGCAGGAACGTGCTGCGCAGCAGGGGGGACCTGCAGGAACACCTGCGCGACCACCCCGACTCGTACGTGTGCCAGTTTTGCGGGGACGCGTTGCCTAGCAAGATTAAGCTCAAGATGCACATCCTCAGCTTGCACCGCAAGATGCTCAGCCTGTCGTGCGGCATCTGCCTCAAGCTGTTTGAGACGCAGCACGTGCTCAGAGACCACGTGCGGCTGGTGCACGAGGGCCAGTTGGCGCCGCTCACTTCCTGCCCGGTCTGCGGCAAGAACTACGGCTCCAAGTGGAAGACCTTCGACCACTTGAACAAATCGCACGGAAGGATTTTTAGGGCGTGCAAGACCTGCCTCGCGGTGTTCGAGAGCGAAGCGCAGCTGCAGGCGCACTGCGACGCTACCGCACACGGCGCCGCGGCGCCTCCCAAGAGCGTTCCGCCGGTATCCGCACCGCCAGACGTCGTTAGCGATAGCGCCGGCGAGGAAGACCAGTCAGACAGCGGTTCGTGCTCGCCGCAGGAGGCAAAAATAGCGCTGCTGGAAAAGCGCATCctcggcggcggcggcggcggctcCAAACGCACCGTCTACGTCAACAGCAACGACCCGTCGCGCTGCGAGATCTGCCTCAAGACGTGGCCGGCCAAGAAGCACCTGTGGCAGCACTACATCCGCTGCCACAAGGCCGTCGCGGCGACCGTGTGCGGCATCTGCCTCAAGACAAACGACGGCTATGCCAGCCTGCAGCGCCATCTGCGCGACACGCACCCCTCGCTGCTGCACGGCCAAGGCTTCGGCTCGAACTTCATCTGTCGCGTGTGCGGCCGCTACCACAACGCCAGTTCGAAGCTGCGCCTCCACATGGTCATCCACGAGAATTTGGATTGGGCTGCGCTGGACCAGCCGGCAGCCGCCGCCGCTCCCGCCTCCGATGACATCAactttgacagtttgattgagCAGGTGGAGTGCTCGGAGGAGGCGGGGTCTTCTTCCTCTGAGGATGACAGCGATGACGGATCGGCGGGTAGTTCGAGTCTCAGCGAGGGTGAGTCTTCGGAGGGGGAGGCGGGGGATGATGGGTTCGGGGGGCGGCCCGAGGAGTTGGACTCGGCGGTGCAGTCGATCAGTTTCGAGCAGGTCAAAGAGGAGGATGTGGACGAGGGTGAGGAGTACTGCGAGTTGCAGAATCCCTCCTACCTCAATGACAATGAGATTGAGTCGGCCGTCGGTAGTATTTTGTAG
Protein Sequence: METKLCRICGKLGQNFIHIFKTEGLRSKIETCLPIIVSPYCLLPDAICEECTATVDNFYTFIKNCLQNIIILEAQYDIRESCLKSKQKRDKGSHVDFGFQKSNKGVQTDDFLDVLSGRHADLKELGSSLPQTLAFLKEEAPFTKKSSSLVDYEVESDSSLDENLCNGKVELSEERQSLDKITKFVDSITSREVWPKKLRCYSLGSDLISEITQRRNLKRKSDVIEVHKPRIYSGLNKRKNKVPKRIDTQDVGGAIASFQTPDEIDEPPPQGTENYDTDIQTATPSQDERLPATVLLQTCLLCEAQLAGPAALNSHVFEVHGIDMVSEAASLGSGDSLPEKSKKKIPNLVKISDLKRNDPNDETLERMNEDPPTLQPSFVCPNCPGDFTSKPDLMAHLRARHPELAAYLCGICMHQCTSAAHLTHHLQGCAQQHPPAARYVCRVCHHGEDSLKALEGHVLEHDFLLDACRRQLRVFDPEDYIQENGEAPENGGLKGPGCAECGLGEFRSFAEFSAHRRDRHSIFHCDLCAKFYGRNSHLWKHVNRLHKGHPSITCQLCHKTSASKYHLLQHFNKAHSSRGAQSEDFMSQKFSAFDFQSVKQSFMRQELSEAVKDADSDEPQWEEEEEEELVAMEEPASAPKEIDSSHNLYTNIITNYTPPPNEGDYKCPKCSKAFQKKLLLKKHKKNCRPRNQKDLLTRCKTCSRTFKDRQSLAKHLVNYHSEYVCEICGGKMQSKCEIVAHIRSRHPGCHLFCGMCRNVLRSRGDLQEHLRDHPDSYVCQFCGDALPSKIKLKMHILSLHRKMLSLSCGICLKLFETQHVLRDHVRLVHEGQLAPLTSCPVCGKNYGSKWKTFDHLNKSHGRIFRACKTCLAVFESEAQLQAHCDATAHGAAAPPKSVPPVSAPPDVVSDSAGEEDQSDSGSCSPQEAKIALLEKRILGGGGGGSKRTVYVNSNDPSRCEICLKTWPAKKHLWQHYIRCHKAVAATVCGICLKTNDGYASLQRHLRDTHPSLLHGQGFGSNFICRVCGRYHNASSKLRLHMVIHENLDWAALDQPAAAAAPASDDINFDSLIEQVECSEEAGSSSSEDDSDDGSAGSSSLSEGESSEGEAGDDGFGGRPEELDSAVQSISFEQVKEEDVDEGEEYCELQNPSYLNDNEIESAVGSIL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -