Basic Information

Gene Symbol
-
Assembly
GCA_027562985.1
Location
JARUHR010000003.1:3154541-3156646[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 1 1.6e+02 4.5 4.0 1 23 435 457 435 457 0.95
2 9 0.00018 0.027 16.4 0.5 1 21 468 488 468 489 0.94
3 9 0.0011 0.16 13.9 4.3 1 23 496 521 496 521 0.95
4 9 0.0018 0.28 13.2 0.2 3 23 529 549 528 549 0.97
5 9 0.00012 0.018 16.9 5.1 1 23 555 577 555 577 0.98
6 9 4.5e-05 0.0068 18.3 0.8 1 23 583 605 583 605 0.97
7 9 0.0011 0.17 13.8 4.6 1 23 611 633 611 633 0.96
8 9 0.37 56 5.9 1.4 1 23 640 660 640 660 0.88
9 9 0.00014 0.021 16.7 1.9 1 23 666 689 666 689 0.97

Sequence Information

Coding Sequence
atgaataaaactTATTTAGAAACGAATCCGGACTGCCATCAACTCGTCGGGCAATATAGCAAGCTTCCACAGAATGACTTGGAGTCATATTTTTCATATCCAGCTCCAGCAGCTCCAAATAATGCCTTTTCACCAACAGCAAATTTTGTTGATATTTATAATACACAAAATGTTGGACGAAATCAACAGAACAATTATATTGGCTCTGGCATCAACAATACTTACCAAGACCAGATGGACATTGTGAACTGGGAAAGTAAAATGATTCCAGATGCCCAGAAAGGTATAAAAATGCATGAAAAGCAGCAAGAGAATAATATGCATGACATCAGGAACAGGGAGCTCAGTCCAATTACCCACTGTGGTGTTGTAGATATGTTTGTATCTGAATGTTATAAGTCAACTCCAAAAGAAACTTATATCAAGTATGATAACCAGTGGTGTACCAGTCAAACTGTACAAAATAGTTGTGAGAGAAATTTGGATTTACCTTCTTGTGCTGAAGTTCCAAGTCAAATAGAAAGATCTTCAACATGCTGTAGTATTGAGAAAACCCAAGACACAAATTCAACCATGAAAATCTGTAGTTATAGTGTTGACAATAATTTTTCAGAAAGCACAAACTCCTTTTATAAGAATACAGGCTACAAATCTGATATATGGACAGATTATTATTCATATAACTATTGTGATAAATATCAAGACAATCAGTCACTTATACCAaatatgaatttattcaatacAGCAACTAACATCCCCTTTGCACCAATCATAAACCCCATCCaccaaaaaaatgatgattCAAATGAAGAAAGTGAAATAATTGTTGAAGAATCTGATGATGAAATAACTGATTATAGTGAAGAtcaggaaaaaaaaatatactccCAGATGAACAAGTGTCTTGTGTGCAATTTAATGTATACACCTTTAGGTACACAGTTCTACTATCTAACTTTAGAGAGTCCTCTCACTATGTCTAGTCAAAAACCAGTACTCAGTAAAATTACAGAAGTTGTAGGAAATATAAGCACCAGAATAAATTATATTTGCAGTGAATGCTTGGGTCTAATAAATAGTATGGATCACTTGCAACTAAAATTAGATAACTTTACTAAAGAGTTTCTCACAAAATATGAGAAAACTTGCAAAGAAAATGATATTCAAATGAAGCAAATGCCGAAAGTCAAGccaatgaaaaaacaagttgGTTTCAAAAACTATAAATGCAAATTGTGTAAAAAAGTATTATGCTTGAAAAAATTTTGTTATCAACATCTGCAAAGACATAAAATTCAAGGCTACCTATGCGAACTATGTGGAAGAAAATCTctgacgaaaaaaaaattcttgcaCCATCTGAAAAGTCACGGTAGTAAAAAGTCTCGCAAAATAGATGCTTTTGAATGCAAGAGCTGCGCCAAGATATTCCGTACTAGATCAAATTTAAATGAACACGTAAACTACTGCTTGGGGACACTGCCTTTCAGCTGCAAGTTCCACTATTGTGACAAGAAATTCGCCTCCGCCACCAAACTGAAGAACCACGTGAAGCTCAAAcatgacaaaaaattcatagcCATTTGCTCAATCTGCAATATCGGATTCGTGAAAGTGTCCGACTACAAAAGTCACATGACCAGCCACAGCACTGACAAAAAGCACAAGTGCCCTAGATGCAACAAAACCTACAAAACGCTGAGCAACTTGAACTTCCACATGAAAAGCCACGAGAAGAGCATGCCGCATTCGTGCCCGCTTTGCGAGAAAGGTTTCATGCGGAAAGAGTACTTGGAAGCGCACGTCAACAAGCACAACGGGGTGAGAAACCACTGCTGCACGGTGTGCGAAAAGCGTTTTGGGTCGCAGAAGAACCTGGACGCGCACCTAAAGTACCACGAGGGGACGGTGAAAAGGCACACCTGCAACGTGTGCGGTAAAACAATGAGCGGTGGATTCGAGGAACACCTCAGAACGCACAGCAATCTCAGGGAGTTCGAGTGCGACAGGTGTGAGATGAAGTTCAATACCAGGGGGTCTTTGAACAAGCATGTTAAGAGGAAGCACGTTGAGGAGCAGGAACCTAGTGTTGATTTGAATAAATGA
Protein Sequence
MNKTYLETNPDCHQLVGQYSKLPQNDLESYFSYPAPAAPNNAFSPTANFVDIYNTQNVGRNQQNNYIGSGINNTYQDQMDIVNWESKMIPDAQKGIKMHEKQQENNMHDIRNRELSPITHCGVVDMFVSECYKSTPKETYIKYDNQWCTSQTVQNSCERNLDLPSCAEVPSQIERSSTCCSIEKTQDTNSTMKICSYSVDNNFSESTNSFYKNTGYKSDIWTDYYSYNYCDKYQDNQSLIPNMNLFNTATNIPFAPIINPIHQKNDDSNEESEIIVEESDDEITDYSEDQEKKIYSQMNKCLVCNLMYTPLGTQFYYLTLESPLTMSSQKPVLSKITEVVGNISTRINYICSECLGLINSMDHLQLKLDNFTKEFLTKYEKTCKENDIQMKQMPKVKPMKKQVGFKNYKCKLCKKVLCLKKFCYQHLQRHKIQGYLCELCGRKSLTKKKFLHHLKSHGSKKSRKIDAFECKSCAKIFRTRSNLNEHVNYCLGTLPFSCKFHYCDKKFASATKLKNHVKLKHDKKFIAICSICNIGFVKVSDYKSHMTSHSTDKKHKCPRCNKTYKTLSNLNFHMKSHEKSMPHSCPLCEKGFMRKEYLEAHVNKHNGVRNHCCTVCEKRFGSQKNLDAHLKYHEGTVKRHTCNVCGKTMSGGFEEHLRTHSNLREFECDRCEMKFNTRGSLNKHVKRKHVEEQEPSVDLNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-