Caen037091.1
Basic Information
- Insect
- Chrysomela aeneicollis
- Gene Symbol
- -
- Assembly
- GCA_027562985.1
- Location
- JARUHR010000059.1:1171972-1176610[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 6.2 9.4e+02 2.1 0.2 3 23 62 82 61 82 0.92 2 18 6.1 9.3e+02 2.1 0.8 3 23 147 168 145 168 0.93 3 18 0.37 57 5.9 0.8 3 23 209 230 208 230 0.84 4 18 0.019 2.9 10.0 1.7 1 23 265 287 265 287 0.97 5 18 0.18 27 6.9 0.6 2 23 293 315 292 315 0.95 6 18 0.0011 0.17 13.9 0.1 2 23 340 361 340 361 0.97 7 18 0.00081 0.12 14.3 0.1 1 23 367 389 367 389 0.98 8 18 0.21 31 6.7 0.3 2 23 436 457 436 457 0.91 9 18 6.9 1.1e+03 1.9 0.1 1 12 493 504 493 509 0.86 10 18 0.015 2.3 10.3 1.1 2 23 554 575 553 575 0.96 11 18 3 4.5e+02 3.1 5.3 1 23 581 603 581 603 0.97 12 18 0.0057 0.86 11.6 1.9 1 23 609 631 609 631 0.91 13 18 0.00017 0.027 16.4 3.6 1 23 637 660 637 660 0.98 14 18 0.00031 0.047 15.6 3.4 1 23 672 695 672 695 0.94 15 18 0.013 2 10.5 0.9 3 23 706 726 705 726 0.98 16 18 0.00019 0.03 16.3 0.7 3 23 734 754 733 754 0.99 17 18 1.8e-07 2.7e-05 25.8 0.6 1 23 760 782 760 782 0.99 18 18 0.3 46 6.2 2.8 1 21 788 808 788 813 0.91
Sequence Information
- Coding Sequence
- atgacctATGAGAGCAAACACGCCAGGTTTCCGAATCTGATAGAAGACAACTCTGACTCCGAAGAGTACGTTATAGAAATATTCCCAGCCCTGTCGGACCCACTGGAAACGGAGCAGGTCATATCCGACATGATTTCGAAGAAAGCCAAGCCGAAAAGCAAAATCGATTGCCTTCCGCCCTTCTGCAACATCTGCCAGATATACTACGCCGACACTATAACCTACGCCCTGCACAGCCTGAAGCACTCAAACGGCGTATTCGAGTGCCCATCCTGCCCCGTACTCGCCAAATTGACCGAGGAACAGATCGAGGCGCACGTGCGGATGCACGAGAACAACCCCAAGTACACGTGCAGCAAGTGCGGCGCCAACATCTACTGCGATTCGATAGCCACCAAGCACGAGAAGATCCACTTTGGCACCAAGAAACCGCTAGCGTGCGGCTTATGCTCAGCCACCTTCCTTTTCCGCTGCACCCTGGCCGCCCACGAGAAAACCCAGCACGGTGACGTCATCGACAGCTACCGCAGGGAGACGAAAGCGCGTCGGGAGGAGGACATCAAGAAGAAGAAGGCGGTCAAAGACCACCTGCCCTACTCCAGCAGGCCGCTGGATCCGGTGCTCTGCCAGTACTGCAACAAAACCTTCCCCGCCAACATCCCCTACGGTCATCACCTCATCAAATTCCACTCCGTCGACAGCAAGTTCCGGTGCTTCCTGTGCAAGTCGTCGGCCAAGATGGACGCCGCCGGCATGGAGAACCACCTCAAGAGGCACGAGTACGCGCAGACGTACAAGTGCTCGGTGTGCAGCGAGGGGTTCTGCCAGCGCCAGGACGCGGAGGACCACGAGAGGTTCCACGAGGACTCCTCCGTTGAGTGCGCTGGCTGCGGCACCCAGTTCTTGTTCGCTAGGTGCCTCTACAGCCACATGAGGAACGTGCACAACATCCAGGCGAGGGGCACCAAGTGCCCGGCCTGCGACCAGATTCACAAGGAGAACGCCTCGGAGCGGGCCGAGTGCGGCATCTGCGGTAAGAGCCTGCAGAACGCGAGGGCTCTGCAGCTGCACGAAAGGATCCACTTCGGCAAAAGGTTGTTTTCTTGTGAGCTGTGCAACCAGGCTTTCGAGGCTGAGGCGTTGCTGGTGAAGCACATGATGAGTCACAGGACGGTCGGCGGTGTGGGGTCGAATAGGAGCCGTAAAAGATTCAGAGTGAAGATATTATTGCCCGACTTAGTGGGAGTGAAAATCGAAGACTACGACATCGACTCCGAAAAAGAAGCATTAGTATACATGTTCAGGCAGTGCCGTATTTGTCAGACCAGGTTCAGAGATGATATTCAATATGCGGTGCATACAGTCGAGCACTCTGCCGATGGCATTTTCTCGTGCTTCGTTTGTCCGAGTGTCGGAAAAATAAGCAATGATAGAATCGAGTGGCATATGATACTCCATCTGAAGATGGACTCTGAATATAGTTGCGGGCAGTGCCCAAATAGGTTCATTCGCACTTGGTCGATGGTACTGATCAAAGAAGAGAAGGACTCGGATTACGAGGTCAAAGCCCGCAAGCCGAAGAGATCCAAGTCGAAGACCCCCAAGCGCAAAAAACCCGATGTGGTGCACCCACCTCCCGTAGAGTTGGACGAGCCGATCCAATGCGACGTCTGCAGCGAGACCTACAAGAACAATGTTGCCTTCTGCCTGCACTCTATGAGCCACAGCGATGACGGCAAGTACTCCTGCCACATCTGCCACTTCCGAAACGCCTCCAAGTACCACATAGAGATGCATGTGAGGGCCCACGAGGGTACCACCAGCTACAAGTGCGAAGTCTGCAACAAGGCCTTCACGGTCTCTACGCACGCCATCGAGCACAAGTATTTCCACACGGGGGAGAAACCCTTCCAGTGCGAGATCTGCGGCAAACACTTCATGTTCTCCCGCTTTCTGGCCTCCCACAGGCGCACCCAGCACTGGGAGATCATTACCGGCACCCCCTTGATCAAGTACGACTGCACCTTGTGCAACAAGCACTACACCTCCTCCAGCGGCCTCAAGAGGCACAACCTGAGGAACCACAACACCGAGGGCATAGACACGTCGGTGTTGTGCGACATCTGCGGCAAGAAGATCTCCAGCAACGAGAAGCTCAAGTTCCACAGGAGGGTGCACACAGGGTACAGACCGCACGGCTGTGAGGTGTGCAGCAAGAGCTTCTCCACGAAGGAACAGAAGAAGGAGCACGTGAGGATCCACACCGGGGAAAAACCTTATGTGTGCAAGTACTGCGGTCGGGGGTTCACCCAGAGGTCCCCTCTCAAGATCCACATCAGGTCCCACACCGGGGAAGTTCCTTATGTGTGCATATTGTGCACCAAGGGGTTTATATCCAAGAGTGCTTTGGATAACCACAGGAAGCATTGCAAGCTGCACTTGATCTAA
- Protein Sequence
- MTYESKHARFPNLIEDNSDSEEYVIEIFPALSDPLETEQVISDMISKKAKPKSKIDCLPPFCNICQIYYADTITYALHSLKHSNGVFECPSCPVLAKLTEEQIEAHVRMHENNPKYTCSKCGANIYCDSIATKHEKIHFGTKKPLACGLCSATFLFRCTLAAHEKTQHGDVIDSYRRETKARREEDIKKKKAVKDHLPYSSRPLDPVLCQYCNKTFPANIPYGHHLIKFHSVDSKFRCFLCKSSAKMDAAGMENHLKRHEYAQTYKCSVCSEGFCQRQDAEDHERFHEDSSVECAGCGTQFLFARCLYSHMRNVHNIQARGTKCPACDQIHKENASERAECGICGKSLQNARALQLHERIHFGKRLFSCELCNQAFEAEALLVKHMMSHRTVGGVGSNRSRKRFRVKILLPDLVGVKIEDYDIDSEKEALVYMFRQCRICQTRFRDDIQYAVHTVEHSADGIFSCFVCPSVGKISNDRIEWHMILHLKMDSEYSCGQCPNRFIRTWSMVLIKEEKDSDYEVKARKPKRSKSKTPKRKKPDVVHPPPVELDEPIQCDVCSETYKNNVAFCLHSMSHSDDGKYSCHICHFRNASKYHIEMHVRAHEGTTSYKCEVCNKAFTVSTHAIEHKYFHTGEKPFQCEICGKHFMFSRFLASHRRTQHWEIITGTPLIKYDCTLCNKHYTSSSGLKRHNLRNHNTEGIDTSVLCDICGKKISSNEKLKFHRRVHTGYRPHGCEVCSKSFSTKEQKKEHVRIHTGEKPYVCKYCGRGFTQRSPLKIHIRSHTGEVPYVCILCTKGFISKSALDNHRKHCKLHLI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -