Basic Information

Insect: Chrysomela aeneicollis
Gene Symbol: -
Assembly: GCA_027562985.1
Location: JARUHR010000033.1:2329607-2330614[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0058 0.89 11.6 3.4 1 23 54 76 54 76 0.94

2 8 0.00015 0.023 16.6 1.7 1 23 88 110 88 110 0.98

3 8 9.4e-05 0.014 17.2 0.8 1 23 133 155 133 155 0.97

4 8 7.3e-05 0.011 17.6 3.8 1 23 161 183 161 183 0.98

5 8 0.00086 0.13 14.2 1.9 1 23 189 211 189 211 0.97

6 8 1.2e-05 0.0018 20.1 4.8 1 23 217 239 217 239 0.98

7 8 2.8e-05 0.0043 18.9 0.9 1 23 245 267 245 267 0.97

8 8 5.2e-05 0.008 18.0 4.1 1 23 273 295 273 295 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0058	0.89	11.6	3.4	1	23	54	76	54	76	0.94
2	8	0.00015	0.023	16.6	1.7	1	23	88	110	88	110	0.98
3	8	9.4e-05	0.014	17.2	0.8	1	23	133	155	133	155	0.97
4	8	7.3e-05	0.011	17.6	3.8	1	23	161	183	161	183	0.98
5	8	0.00086	0.13	14.2	1.9	1	23	189	211	189	211	0.97
6	8	1.2e-05	0.0018	20.1	4.8	1	23	217	239	217	239	0.98
7	8	2.8e-05	0.0043	18.9	0.9	1	23	245	267	245	267	0.97
8	8	5.2e-05	0.008	18.0	4.1	1	23	273	295	273	295	0.98

Sequence Information

Coding Sequence: ATGGAATTGTCAAATCCTGATTCCAGTAGTTCTTCTCAAATAGACCACCAAGTGGAAACAGAAGATCCTCTATCATCATTTTTAAAAGTTGAATTAAAGTCTTCACCACCAACACCATTACAAGGGACATTCATAGAAATAGATAATAAGGTTCTCAAATTTCAATGTCCTGATtgcaataaaaaattcaaatgcaAAGAAAGGGCACAGCGGCATGTTGAATCCCATATTATTGATCAGGCTCTGTTTGAAAATGAAGATTATAGATGCCCTGAATGTAATATTCATTGTGAAAGCTTAGATGAGCTGAAATTGCATATTGAGAAACACAAAAAGTCTAAAGGGAGACCTAGAAAATCCAGTTCAAGTCAGATTGTGGCTGATGATCTAAAACAATTCATTTGTGAAAGTTGTGCAAAAGGTTTTAAGACAAAACAACAACTGCAAACACATTACTTAGTGCATATTGATATAAAACCATTTGTATGTGATATTTGCCAGAAGTCATTCAAGTTGAAGCAACAGCTTCATAACCATTTCAAAGTACATGATGATACCAAACCATTTATTTGTGAGATATGTGAGAAAGGATTCAAGCTGAAGCAGCATATTGAAAACCACTCAAAGACTCATTCTGATGAAAGACCATTCAAATGCAATTTTTGTGATAAGGCTTTCAAATTTAAGCAGCATCTACAGATTCATAGTAGAGTACATGATGACCTGAGACCATTTGACTGCAGTTTTTGTGGGAAAGCTTTCAAACTAAAGCAGCAAATGCAGGTTCACCTGAAGGTACATATGGATGAAAGACCTTTTCAATGTGATATTTGCAGCAAAAGTTTCAAGTTCAAACAACAGTTGCATGTACATTCCAAAATACATTCTAAAAAACTGGACAAAGTGGTGGATGGTTTTTTTGAGGAAACCATTTTTTCTGTTAAAGTAGAGACTACTTCTGACAGTGAATCAATTAAATATGAGCCTAAAGAATTGACTAGTAATTGA
Protein Sequence: MELSNPDSSSSSQIDHQVETEDPLSSFLKVELKSSPPTPLQGTFIEIDNKVLKFQCPDCNKKFKCKERAQRHVESHIIDQALFENEDYRCPECNIHCESLDELKLHIEKHKKSKGRPRKSSSSQIVADDLKQFICESCAKGFKTKQQLQTHYLVHIDIKPFVCDICQKSFKLKQQLHNHFKVHDDTKPFICEICEKGFKLKQHIENHSKTHSDERPFKCNFCDKAFKFKQHLQIHSRVHDDLRPFDCSFCGKAFKLKQQMQVHLKVHMDERPFQCDICSKSFKFKQQLHVHSKIHSKKLDKVVDGFFEETIFSVKVETTSDSESIKYEPKELTSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -