Caen017500.2
Basic Information
- Insect
- Chrysomela aeneicollis
- Gene Symbol
- -
- Assembly
- GCA_027562985.1
- Location
- JARUHR010000013.1:2278991-2284439[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.022 3.4 9.8 1.6 1 23 343 365 343 365 0.85 2 12 2.1 3.3e+02 3.5 0.3 1 19 367 385 367 388 0.86 3 12 4.2e-07 6.4e-05 24.6 2.5 2 23 459 480 458 480 0.97 4 12 0.00063 0.097 14.6 0.2 1 23 486 508 486 508 0.97 5 12 0.00054 0.082 14.9 1.6 1 23 514 536 514 536 0.98 6 12 2.8e-05 0.0042 18.9 1.5 1 23 542 564 542 564 0.98 7 12 0.057 8.6 8.5 0.5 1 14 570 583 570 594 0.88 8 12 2.5e-06 0.00038 22.2 1.4 1 23 602 624 602 624 0.98 9 12 0.026 4 9.5 0.1 1 23 630 652 630 652 0.93 10 12 4.3e-05 0.0065 18.3 1.1 1 23 658 680 658 680 0.98 11 12 0.0018 0.27 13.2 0.5 1 23 686 708 686 708 0.97 12 12 1.9e-05 0.0029 19.4 2.1 1 23 714 736 714 737 0.96
Sequence Information
- Coding Sequence
- ATGGAAAACTCCAAATATGAAGAACTTTGTAGATTGTGTGCTACCAAAACAACAATGGTTCTAGCTATAAATATATTCGAGCAAGAAGGTACAATTCGCCAGATCAGTAAAAAGATCGAAACTTGTCTTCCTGTAAACGTGAATCAAACTGATGAACTTCCTAAAATGATATGTGAGAACTGTTTGTACAAACTAGAATTATTCAGTGATTTTCGTGAGCGCTCTGCTAGGACAGAAAAGCTATTGCTAGAATTATACAAAGAGCTTTCTTCTAGTCTTCTCAATGATGTGCAGCATACCTGCTTGGTTCCTATGGATGGAAATGGACTGATTATTGTTCCACACCAGCTGCTCAGCAATCAGAACATTTCTGACTTGGATCTGGGTCCACTGGATGGCAGAATGATTGTCCAACAAGAAATAATACATTTGAACTCCCATTCCTTGGACATCATGAATAATCATAGTTTGAGTAATCAGGAATATTCAAATCAAAGTGTGATCACTCAGGACTCTGCAGTGATGAATTCCAATGGGCAGAGTGTTGGAGACAGTAAATTTAATGATAATTTGGGGCTTCTACAGCATCATCTCTTGAGTGAACAGTTCAAGCTACAACATGACTACCAAATGGGTATACAAAATGCTGCTTCTGCAGTCAGTTTGTCCAATGGGGTTCATAGTCAGGACACAGATCAAAGTTATAGTATTGCAAAACATTTAAACCACCAAGGTATATGCTCTATAGAATatgaagaatctaaaattgTTCAAAGTAGTGGCATGGAAACTTATAAGCATGAAGATAGTAATAGTGGACACTCCCTACATGTGGAAGAGCAAATTAGTACTGATAATTCCATGGAAGCTAAGAATATTTACAATTTAGACTCAGACAGTAGTAATCTCCACATAGAAGATCAATTCACCAAAATGGACCCCAGAAGCACTGAGAACAAACAATTCTATGATTTGGATAGTAGCAATAGTGAATCTCTGTTGATCTTGACCAGTACCAAGGATTGGTTCTATTGTAACCTATGTGGAAAATCCTTCCAAGATAAGGCAGTACATGAAGCTCACTACAGCTCTCATTTTCACAAATGCAGTACTTGCTTGGCTGTTTTCACTAGTGAAGAAGTATTTTTGGAGCATAAGACTGTTTGTGTGGAGGATTCTGAGCTCCTCAACACCGAGCTCTCCACATCGGACATGCTCGTGCCGAAGAAACCCGATGCGACGTTGGACAGCGACGACAGCGACCCCTACGGGGAACTCGATGAGGTGCCCGAACCGGCCGAAGGGCACCCCCAAGGGGCCCGCGAGGAAGGCGACGACGAGGAGGGGCGCAAGCGCAAGAAGTTGTCGCCGAAGGAGTGCAAGGAGTGCGGCAAGACGTACAAGACCAACTACAAGTTGACTGAGCACATGCGCAAGCACACGGGCGAGAAGCCCTACAAGTGCGGATCGTGTGAGAAGGCGTTCAGGTCGAAGATTGGACTAGCGCAGCATGAGGCCAAGCACACAGGTCAGTACGAGTTCTCCTGTCCCACCTGCGGCAAGGGCTTCCAGTGCAAGAGCTACCTCATAGGCCACCAGCGTGTCCACTCCAACCTCAAGCCCTACCCTTGCACCACCTGCGGCCAGAATTTCAAGACGAAGCAGTCGTTGCTGGACCACACCAATCGGCATCTCGGCGTCAAGCCTTATATCTGTGATATTTGCGGCAGGGGATTCATCACAAAAGGTCTGTGGGTATGTCGTGCGCATAAAAAAACTCACACGGGCTTCGACAACCGAAAGTACTCTTGCAAAATATGCGAGAAATTGTTCGTCTCCAAGAGCTACCTGCGCACCCACCTACGCATTCACACGGGTGAGAAGCCCTACATGTGCGAGGTGTGCGGCAAGGGCTTCCTCACAGGGGTGGACCTGAAAATTCACTCGACGATGCACACGGGAGAAAAGTCGTTCGTCTGTGAAATGTGTGGCAAGGCTTTCGCCAGGCAAGTGGCCTTGAGGTGTCACAGGAGGTCCCACACGGGAGAAAGACCGTACAGCTGTGACCTTTGCGGTCAAACGTTCACGCAGTTCACGCCGATGGCGATCCACAAACGATTGCACACCGGGGAAAGACCGTACACGTGCGAAACGTGCGGCAAAGCCTTCGTCTCGAGGTCGACCATGATGTCGCACGCTAAAAAACACCATGCACGATGA
- Protein Sequence
- MENSKYEELCRLCATKTTMVLAINIFEQEGTIRQISKKIETCLPVNVNQTDELPKMICENCLYKLELFSDFRERSARTEKLLLELYKELSSSLLNDVQHTCLVPMDGNGLIIVPHQLLSNQNISDLDLGPLDGRMIVQQEIIHLNSHSLDIMNNHSLSNQEYSNQSVITQDSAVMNSNGQSVGDSKFNDNLGLLQHHLLSEQFKLQHDYQMGIQNAASAVSLSNGVHSQDTDQSYSIAKHLNHQGICSIEYEESKIVQSSGMETYKHEDSNSGHSLHVEEQISTDNSMEAKNIYNLDSDSSNLHIEDQFTKMDPRSTENKQFYDLDSSNSESLLILTSTKDWFYCNLCGKSFQDKAVHEAHYSSHFHKCSTCLAVFTSEEVFLEHKTVCVEDSELLNTELSTSDMLVPKKPDATLDSDDSDPYGELDEVPEPAEGHPQGAREEGDDEEGRKRKKLSPKECKECGKTYKTNYKLTEHMRKHTGEKPYKCGSCEKAFRSKIGLAQHEAKHTGQYEFSCPTCGKGFQCKSYLIGHQRVHSNLKPYPCTTCGQNFKTKQSLLDHTNRHLGVKPYICDICGRGFITKGLWVCRAHKKTHTGFDNRKYSCKICEKLFVSKSYLRTHLRIHTGEKPYMCEVCGKGFLTGVDLKIHSTMHTGEKSFVCEMCGKAFARQVALRCHRRSHTGERPYSCDLCGQTFTQFTPMAIHKRLHTGERPYTCETCGKAFVSRSTMMSHAKKHHAR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -