Basic Information

Insect: Chrysomela aeneicollis
Gene Symbol: prg
Assembly: GCA_027562985.1
Location: JARUHR010000001.1:29456081-29465383[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.14 21 7.3 1.1 2 19 160 177 159 182 0.81

2 10 0.28 42 6.3 0.5 1 23 188 211 188 211 0.97

3 10 6.8e-07 0.0001 24.0 0.6 1 23 217 239 217 239 0.97

4 10 1.5e-08 2.3e-06 29.2 2.8 1 23 245 267 245 267 0.98

5 10 9.9e-06 0.0015 20.3 0.0 1 23 273 295 273 295 0.95

6 10 4.6e-05 0.0069 18.2 5.1 1 23 301 323 301 323 0.98

7 10 1.6e-06 0.00024 22.8 1.0 1 23 427 449 427 449 0.99

8 10 7e-05 0.011 17.7 2.2 3 23 457 477 455 477 0.98

9 10 6.5e-06 0.001 20.9 1.2 1 23 483 505 483 505 0.99

10 10 1.8e-06 0.00027 22.7 0.9 1 23 511 533 511 533 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.14	21	7.3	1.1	2	19	160	177	159	182	0.81
2	10	0.28	42	6.3	0.5	1	23	188	211	188	211	0.97
3	10	6.8e-07	0.0001	24.0	0.6	1	23	217	239	217	239	0.97
4	10	1.5e-08	2.3e-06	29.2	2.8	1	23	245	267	245	267	0.98
5	10	9.9e-06	0.0015	20.3	0.0	1	23	273	295	273	295	0.95
6	10	4.6e-05	0.0069	18.2	5.1	1	23	301	323	301	323	0.98
7	10	1.6e-06	0.00024	22.8	1.0	1	23	427	449	427	449	0.99
8	10	7e-05	0.011	17.7	2.2	3	23	457	477	455	477	0.98
9	10	6.5e-06	0.001	20.9	1.2	1	23	483	505	483	505	0.99
10	10	1.8e-06	0.00027	22.7	0.9	1	23	511	533	511	533	0.98

Sequence Information

Coding Sequence: ATGGAGACTTGGCGGAGTTATGCAACGATATGTCGCCTGTGTCTGCAGAAGGATGGCTTCATGTTGGGCATTTTCAACCATATACAGGGAAAGGATAGGAGCATTTATAAGAAAATTATCGATTGTACAGCACTTCAGATTTCACACGGAGATGGTTTGCCCAACGTAATATGCCACCGATGCCTCTACAAAATAGAATTTTGTCTAGAATTTCGCCAGTTGTGTTTCATGTCTGATGCCACGCTAAGACAACTAGCAGCAGCCAACAAGGAAAACGAGGGGGCCAACGGAAATTCTCAGCTTCCAATTTATGAACAATTAGGATCGGCAGGTCACGATGACAACGTAGTCATGGTCGTAGACCCGTTGACCTACGACTACGAATCCGACTACGACTCTGAAAAAGAAGCCCAAAGCGACGTCGAGAACGGCGGCGAGTCCGTCAACGACTTGGAGCCGGAAAGCCGCGGCGTCACCATGTGCAAATACTGCGACCACGCGTTCACGGACGCCGCCGAGTGTCTCAACCACGAGACCGCCGTCCACAACTCGGACACACCCTACAACTGTCACTCGTGCCTGATGGGATTCGCCGACAGGGTGGTCTATTCGGCGCACCTCAAGAGCATCCACAAAAACGACAAGCCGTACAATTGCCCGCAGTGTGAAAGAACGTTCGCGCGCAGGTCGGACCTTCGCAAGCACACCATCGTCCACACCGGCGTGAAGCCGTTCACCTGCTCAACCTGCGGCAAATCCTTCTCGCGCAACACCAACCTCTCGAAGCACATGCGTCTCCACTCGGGCACCAAGCCGTTCGTGTGCCCCAAGTGCCCCAGGACGTTCCCCTCCAAGGCGGAGCTGGCCAAGCACGCCGTCATCCACTCCGGCCAGAAGCTGTTCAGCTGCAACTACTGCCACCTGGGCTTCCGCAGGCGCGACAAGCTGCAGCGGCACGAGAAGCGCCACTTTCCGCAGGAGAACTCCGAGGACAAGTCGCAGGAGTTGCAGCTGATGCGGGAGACTCTGTCGATCTACTCGCGCTCGAATGGGGACACAAAGATTGAGagggaggaggaggaggaggacgATAAGCAAGAAAACATGGTGATCAACCTGGACCCGTTCAGCCACAACAATTTCCCAAGCGAGGTCACCCCCCAACGTGGAGACAACTCCGAAAACGAGCCCTCCAACGAACACGACACCTCCGCCGAAGGGGAGGCCATCGAAGAACCGAAGAAAGACGCGGGCTCCGGCAGGAAAGTCGTCAAGCCGTTCAAGTGCAGCCAGTGCTCCAAAAGGTTCTCGAAGGCGGAGAATCTTCTGGCGCACCAGGCGACGCACGGAGGCAAAAGGCCCTTCGGCTGTCACATCTGCAGCAAGTCCTTTATGAGGAAACGCGAGCTGGACCGGCACATCGTCACCCACTCGGGGATGAAGCCGTACAAGTGCCCCAGGTGCGCCAAGAGCTTTGGGAGGAAGGACAAGATGATGAGGCATCTGAGGATTCATGATGTCAAGAAGAGCTTCAACTGCACCATGTGTGGGAGTACTTTTAATAGGAGGGATGCGCTCCAACAGCACATGAAGATTCACGTGACTAAGACTGAGAACGAGGAAGGTGGGGTTGTTAAGGAGGGGATGAATGTGGCGTAG
Protein Sequence: METWRSYATICRLCLQKDGFMLGIFNHIQGKDRSIYKKIIDCTALQISHGDGLPNVICHRCLYKIEFCLEFRQLCFMSDATLRQLAAANKENEGANGNSQLPIYEQLGSAGHDDNVVMVVDPLTYDYESDYDSEKEAQSDVENGGESVNDLEPESRGVTMCKYCDHAFTDAAECLNHETAVHNSDTPYNCHSCLMGFADRVVYSAHLKSIHKNDKPYNCPQCERTFARRSDLRKHTIVHTGVKPFTCSTCGKSFSRNTNLSKHMRLHSGTKPFVCPKCPRTFPSKAELAKHAVIHSGQKLFSCNYCHLGFRRRDKLQRHEKRHFPQENSEDKSQELQLMRETLSIYSRSNGDTKIEREEEEEDDKQENMVINLDPFSHNNFPSEVTPQRGDNSENEPSNEHDTSAEGEAIEEPKKDAGSGRKVVKPFKCSQCSKRFSKAENLLAHQATHGGKRPFGCHICSKSFMRKRELDRHIVTHSGMKPYKCPRCAKSFGRKDKMMRHLRIHDVKKSFNCTMCGSTFNRRDALQQHMKIHVTKTENEEGGVVKEGMNVA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00740226;
90% Identity: -
80% Identity: -