Basic Information

Insect: Chrysomela aeneicollis
Gene Symbol: -
Assembly: GCA_027562985.1
Location: JARUHR010000001.1:7155353-7156882[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00084 0.13 14.2 1.9 3 23 4 24 2 24 0.97

2 16 0.00062 0.094 14.7 1.6 1 23 33 55 33 55 0.98

3 16 0.00013 0.019 16.8 3.5 1 23 64 86 64 86 0.98

4 16 0.00017 0.026 16.4 4.4 1 23 95 117 95 117 0.97

5 16 7.2e-06 0.0011 20.8 4.1 1 23 126 148 126 148 0.98

6 16 0.0002 0.031 16.2 2.3 1 23 157 179 157 179 0.97

7 16 0.00011 0.016 17.1 2.3 1 23 188 210 188 210 0.97

8 16 6.1e-05 0.0094 17.8 2.0 1 23 219 241 219 241 0.98

9 16 0.02 3.1 9.9 0.4 1 23 250 272 250 272 0.98

10 16 1.5e-05 0.0022 19.8 1.7 1 23 281 303 281 303 0.98

11 16 0.037 5.6 9.1 0.4 1 23 319 341 319 341 0.98

12 16 0.0021 0.32 13.0 5.4 1 23 350 372 350 372 0.98

13 16 0.00013 0.019 16.8 1.0 1 23 381 403 381 403 0.97

14 16 0.00028 0.043 15.7 0.5 1 23 412 434 412 434 0.98

15 16 0.23 35 6.6 4.0 1 23 443 465 443 465 0.97

16 16 0.0017 0.25 13.3 5.3 1 23 474 496 474 496 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00084	0.13	14.2	1.9	3	23	4	24	2	24	0.97
2	16	0.00062	0.094	14.7	1.6	1	23	33	55	33	55	0.98
3	16	0.00013	0.019	16.8	3.5	1	23	64	86	64	86	0.98
4	16	0.00017	0.026	16.4	4.4	1	23	95	117	95	117	0.97
5	16	7.2e-06	0.0011	20.8	4.1	1	23	126	148	126	148	0.98
6	16	0.0002	0.031	16.2	2.3	1	23	157	179	157	179	0.97
7	16	0.00011	0.016	17.1	2.3	1	23	188	210	188	210	0.97
8	16	6.1e-05	0.0094	17.8	2.0	1	23	219	241	219	241	0.98
9	16	0.02	3.1	9.9	0.4	1	23	250	272	250	272	0.98
10	16	1.5e-05	0.0022	19.8	1.7	1	23	281	303	281	303	0.98
11	16	0.037	5.6	9.1	0.4	1	23	319	341	319	341	0.98
12	16	0.0021	0.32	13.0	5.4	1	23	350	372	350	372	0.98
13	16	0.00013	0.019	16.8	1.0	1	23	381	403	381	403	0.97
14	16	0.00028	0.043	15.7	0.5	1	23	412	434	412	434	0.98
15	16	0.23	35	6.6	4.0	1	23	443	465	443	465	0.97
16	16	0.0017	0.25	13.3	5.3	1	23	474	496	474	496	0.98

Sequence Information

Coding Sequence: ATGTTTGGGTGCCATATTTGCACATATAAAGCGAAACGTGAGAGCAGCCTCAAGAGACACCTCCTGATTCACAAAAAGCCtgaagatgtcgagatgtttGAGTGCCTCatttgcaaatataaaacaaaagtgAAGAGAAGTCTCAAGAGGCACCTTTTGATTCATAATGAGCCCGAAGATGTCAAGATGTTCGAGTGTCATATTtgcgaatataaagcaaaacacAAGGGCAACCTCAAGAAACACCTCCTGATTCACAAGGAACCAGAAGATGTAGAGATGTTCGACTGTCATATTtgcgaatataaagcaaaacatAAGAGCAACCTTAAGAAACACCTCCTGATTCACAAGGAACCAGAAGATGTAGAGATGTTCGAATGTCATATTTGCGGATATAAAGCAAAACATAAGAGCAACCTCAAGAAACACCTCCTGATTCACAAGGATCCAGAAGATGTAGACATGTTCGACTGTCATATTTGCGATTATAAAGCAAAACATAAGAGAAATCTCATTGCACACCTCCTGATTCACAAGAAACCagaagatgtcgagatgttcgacTGCCATATTtgcgaatataaagcaaaaaaaaaCAGCAACCTCAAGAGACACCTTTTGATTCATAAGAACCCCGAAGAAATCGAAatgttcgagtgccatatttgcaaatataaagcaaACCAGAAGGGCAACCTCAGGAAACACCTCCTAATTCACAAGGAACCAGAAGATGTAGAGATGTTTGAGTGCTATATATGCAAATATAAAGCAAATGGTGAAGCCAATTACAAGAAACACCTTTTGGTTCACAAAAAGCCCGAAGATGTAGAGATGTTCAAGTGCCATATTTGCGAATATAAAACAAACGATAAGGGCAACCTCGAGAAACATCTCCTGATTCACAAGGAACCAGACGATGTAGAGATGTTTGACTGCCAAATATCCATGTTTGAGTGCTATGTATGCAAATATAAAGCAAATGGAGAGGCCAATTACAAGAAACACCTTTTGGTTCACAAaaagcccgaagatgtcgagatgttcaAGTGTCATATCTgcgaatataaaacaaaacataAGAGTATTCTCAAGAGACATATATTGATTCACAAGGAGCCTGCAGATGTTGAGATGTTTGACTGCAATATTTGCGAATTTAAATCGAAACAAAAGAGTGGTCTGAAGAGACACCTCTTGATTCACAAGGAGCCCGCAGATATTGAGATGTTTGAGTGCAATATTtgcgaatataaagcaaaactgAAGGGCGAACTCAAGAGACACCTTTTAACTCACAAGGAGCCCGAAGATATCGAGATGTTTGAGTGCCGTTtttgcaaatataaagcaaaacaaaAGAGATACCTCTTGGCACACCACCTGCTTCACATGAATCCTGAAGAAGTCAATAGGTTCAAGtgccatatttgcaaatataaaacaaaacgaAAGAGCATCCTCAAAAGGCACCTTTCTATCCACAAAAAGCCCGgagatgtcgagatgttcgagCAACCTCAATAG
Protein Sequence: MFGCHICTYKAKRESSLKRHLLIHKKPEDVEMFECLICKYKTKVKRSLKRHLLIHNEPEDVKMFECHICEYKAKHKGNLKKHLLIHKEPEDVEMFDCHICEYKAKHKSNLKKHLLIHKEPEDVEMFECHICGYKAKHKSNLKKHLLIHKDPEDVDMFDCHICDYKAKHKRNLIAHLLIHKKPEDVEMFDCHICEYKAKKNSNLKRHLLIHKNPEEIEMFECHICKYKANQKGNLRKHLLIHKEPEDVEMFECYICKYKANGEANYKKHLLVHKKPEDVEMFKCHICEYKTNDKGNLEKHLLIHKEPDDVEMFDCQISMFECYVCKYKANGEANYKKHLLVHKKPEDVEMFKCHICEYKTKHKSILKRHILIHKEPADVEMFDCNICEFKSKQKSGLKRHLLIHKEPADIEMFECNICEYKAKLKGELKRHLLTHKEPEDIEMFECRFCKYKAKQKRYLLAHHLLHMNPEEVNRFKCHICKYKTKRKSILKRHLSIHKKPGDVEMFEQPQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -