Basic Information

Insect: Chrysomela aeneicollis
Gene Symbol: -
Assembly: GCA_027562985.1
Location: JARUHR010000033.1:2577230-2578865[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0018 0.27 13.2 0.3 2 23 48 69 47 69 0.97

2 17 0.56 85 5.4 3.6 1 23 73 95 73 95 0.98

3 17 7.3e-05 0.011 17.6 1.1 1 23 101 123 101 123 0.99

4 17 1.1e-05 0.0016 20.2 0.2 1 23 129 151 129 151 0.94

5 17 2e-05 0.0031 19.4 0.3 1 23 157 180 157 180 0.98

6 17 7.1e-06 0.0011 20.8 4.5 1 23 186 208 186 208 0.98

7 17 0.0027 0.42 12.6 0.6 2 23 215 236 214 236 0.97

8 17 2.3 3.5e+02 3.4 0.7 3 23 245 265 244 265 0.81

9 17 0.048 7.3 8.7 0.3 2 23 269 290 269 290 0.97

10 17 2.2e-05 0.0034 19.2 5.8 1 23 299 321 299 321 0.98

11 17 6.8e-07 0.0001 24.0 1.3 1 23 328 350 328 350 0.98

12 17 1e-05 0.0015 20.3 0.4 1 20 356 375 356 378 0.94

13 17 0.0016 0.24 13.4 4.3 1 23 384 406 384 406 0.97

14 17 4.2e-05 0.0064 18.3 0.9 3 23 414 434 412 434 0.98

15 17 0.34 52 6.0 4.2 2 20 441 459 441 461 0.92

16 17 0.098 15 7.7 3.8 2 23 472 493 472 493 0.96

17 17 0.036 5.5 9.1 0.2 1 23 499 521 499 521 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0018	0.27	13.2	0.3	2	23	48	69	47	69	0.97
2	17	0.56	85	5.4	3.6	1	23	73	95	73	95	0.98
3	17	7.3e-05	0.011	17.6	1.1	1	23	101	123	101	123	0.99
4	17	1.1e-05	0.0016	20.2	0.2	1	23	129	151	129	151	0.94
5	17	2e-05	0.0031	19.4	0.3	1	23	157	180	157	180	0.98
6	17	7.1e-06	0.0011	20.8	4.5	1	23	186	208	186	208	0.98
7	17	0.0027	0.42	12.6	0.6	2	23	215	236	214	236	0.97
8	17	2.3	3.5e+02	3.4	0.7	3	23	245	265	244	265	0.81
9	17	0.048	7.3	8.7	0.3	2	23	269	290	269	290	0.97
10	17	2.2e-05	0.0034	19.2	5.8	1	23	299	321	299	321	0.98
11	17	6.8e-07	0.0001	24.0	1.3	1	23	328	350	328	350	0.98
12	17	1e-05	0.0015	20.3	0.4	1	20	356	375	356	378	0.94
13	17	0.0016	0.24	13.4	4.3	1	23	384	406	384	406	0.97
14	17	4.2e-05	0.0064	18.3	0.9	3	23	414	434	412	434	0.98
15	17	0.34	52	6.0	4.2	2	20	441	459	441	461	0.92
16	17	0.098	15	7.7	3.8	2	23	472	493	472	493	0.96
17	17	0.036	5.5	9.1	0.2	1	23	499	521	499	521	0.95

Sequence Information

Coding Sequence: ATGGAGGCAATTCTTGATATCAAAAAAGAAATCAAGGAAGAACCAACTGAAGACAGTGGAGAATGGAATGAGAACGATCCTTGTGATAAGCTACTCAAAGTTGAAATACTAGAAACGGAATGTGCTAATCCAGAAGACCTCACCTGTAGAGAATGTGATGCTTTGTTTATCAACGAACATGAATTGAAGCTACATATCATGATACATTCCGAGAACCATACATGTTTTGTATGCAAAGAGTTCATCAAAAATAGGTTCCAGTTTGTAGGTCACGTCCGGAAACACATGTGTTTGAAGCCTTTCAAATGTCCCAGTTGTGAAAGAACATTTCCCACGTCCAGAGAAACTAAGTTGCACCAACGTGTACACAGCAATGATAGGCCTTTCATGTGTACAGAATGTGGAAAGGCATTCAAGCAAATTTCAACTCTGAAGGACCATGAAGTTGTACATACAGGTGAAAAACGGTTCAGATGCAAGATTTGTGAAGGGGCTTTTGCTACAGCTACAAGCCTCCGCCGACACACGAGAGTAATGCATGAAACAGTTCGATCTTTCAAATGCCATTTCTGTAAAGAAAGCTTTACCAGCAAACAAGCCTTGAAGCAGCACATGAGTATCCATAAAGACATGGACCCATTGAAGTGTCAACTCTGTGGAGAAAGTCTTGACAGCTTAGAACAATACACTTCACATAGGAATAAgcatattgaaatgaaaacatcTGGAAGTTGTGATTACTGTGGCAATAAGACATTCTACTTTGGTCTCAAAGAGCATATTGAGAAAATGCACCAACCCAGATCATGTGATATCTGTAGTCTAGTATTTTATGATGTAAAATCTATTGATAACCATCAAAAGAGTCATTTAGAAGAACCAGAAAGAGAAGAGTATAGCTGCCATGTGTGTAACAAACATTTTGAATTTCCTCGCTACCTCAAAGCTCACATGAAACGCCATGAAATGGACTACAAAAAATTTCAGTGTGATCTGTGCCAGAAGACATTTTCCTCTAAAAGAGACTTGACAGATCACTTGAATGTCCATGCAGACGTGAAAGATTACAAGTGTCCAATTTGTGATAAGGCTTTCAGAACAAAGCAAAGTGTCAGCAAGCACTTGCCAATACATTCTGAGAAACGCCCATTCAAGTGCAATCTTTGTGAGAAGAGATTCAAGAAACAGTCAATTTTGCGCAAACACTCATTCACACATTCACGTTCAAGGCCATTTGGCTGTGACTTGTGTGAGAAAACCTACAAATCCAAGGAATCATTGAGAGTTCACAGACTGACCCATCAAAAATCAAGATTGAGAAAATGCAAGATTTGCAAAAAGCAGTTCACCTTTGAAACTGTCTACAAAAATCATTATTGCTTCAGCAATTACCGTTTTGACGTCAATAATCGTAGGTGTTCTTACTGCAAACGGCAGTGTAAAAGTAGTGTAACTTATAGTTACCATATACAAGGGCATGCTAGACAAAGGTTATTTGAATGTCAAACTTGTAAAGTATTTGTGAAATATCCATATCAATTAGAATTACATGCAATCTTACACAGAAGCTTAGAAAATGATAAGTGA
Protein Sequence: MEAILDIKKEIKEEPTEDSGEWNENDPCDKLLKVEILETECANPEDLTCRECDALFINEHELKLHIMIHSENHTCFVCKEFIKNRFQFVGHVRKHMCLKPFKCPSCERTFPTSRETKLHQRVHSNDRPFMCTECGKAFKQISTLKDHEVVHTGEKRFRCKICEGAFATATSLRRHTRVMHETVRSFKCHFCKESFTSKQALKQHMSIHKDMDPLKCQLCGESLDSLEQYTSHRNKHIEMKTSGSCDYCGNKTFYFGLKEHIEKMHQPRSCDICSLVFYDVKSIDNHQKSHLEEPEREEYSCHVCNKHFEFPRYLKAHMKRHEMDYKKFQCDLCQKTFSSKRDLTDHLNVHADVKDYKCPICDKAFRTKQSVSKHLPIHSEKRPFKCNLCEKRFKKQSILRKHSFTHSRSRPFGCDLCEKTYKSKESLRVHRLTHQKSRLRKCKICKKQFTFETVYKNHYCFSNYRFDVNNRRCSYCKRQCKSSVTYSYHIQGHARQRLFECQTCKVFVKYPYQLELHAILHRSLENDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -