Basic Information

Insect: Chrysomela aeneicollis
Gene Symbol: -
Assembly: GCA_027562985.1
Location: JARUHR010000059.1:1152077-1155091[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.066 10 8.3 1.1 2 23 87 108 86 108 0.96

2 18 5 7.6e+02 2.4 6.3 1 23 114 136 114 136 0.97

3 18 0.0094 1.4 10.9 1.6 1 21 142 162 142 164 0.84

4 18 6.6e-06 0.001 20.9 2.7 1 23 170 193 170 193 0.97

5 18 0.0019 0.3 13.1 6.1 1 23 205 227 205 228 0.92

6 18 0.0011 0.17 13.9 0.8 3 23 239 259 238 259 0.99

7 18 4.3e-06 0.00066 21.5 0.1 1 23 265 287 265 287 0.98

8 18 8.8e-06 0.0013 20.5 2.8 1 23 293 315 293 315 0.98

9 18 0.0017 0.26 13.3 0.3 1 21 321 341 321 342 0.93

10 18 0.52 80 5.5 4.2 2 23 394 415 393 416 0.85

11 18 0.27 42 6.3 0.5 1 23 421 443 421 443 0.97

12 18 0.00034 0.053 15.5 1.0 1 23 449 471 449 471 0.93

13 18 0.00011 0.016 17.1 3.2 1 23 477 500 477 500 0.97

14 18 0.015 2.2 10.4 2.4 3 23 514 535 512 535 0.94

15 18 1.7e-05 0.0026 19.6 0.2 3 23 546 566 544 566 0.97

16 18 3.8e-06 0.00058 21.6 0.7 1 23 572 594 572 594 0.96

17 18 1.9e-05 0.003 19.4 1.0 1 23 600 622 600 622 0.98

18 18 0.0023 0.34 12.9 0.5 1 21 628 648 628 649 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.066	10	8.3	1.1	2	23	87	108	86	108	0.96
2	18	5	7.6e+02	2.4	6.3	1	23	114	136	114	136	0.97
3	18	0.0094	1.4	10.9	1.6	1	21	142	162	142	164	0.84
4	18	6.6e-06	0.001	20.9	2.7	1	23	170	193	170	193	0.97
5	18	0.0019	0.3	13.1	6.1	1	23	205	227	205	228	0.92
6	18	0.0011	0.17	13.9	0.8	3	23	239	259	238	259	0.99
7	18	4.3e-06	0.00066	21.5	0.1	1	23	265	287	265	287	0.98
8	18	8.8e-06	0.0013	20.5	2.8	1	23	293	315	293	315	0.98
9	18	0.0017	0.26	13.3	0.3	1	21	321	341	321	342	0.93
10	18	0.52	80	5.5	4.2	2	23	394	415	393	416	0.85
11	18	0.27	42	6.3	0.5	1	23	421	443	421	443	0.97
12	18	0.00034	0.053	15.5	1.0	1	23	449	471	449	471	0.93
13	18	0.00011	0.016	17.1	3.2	1	23	477	500	477	500	0.97
14	18	0.015	2.2	10.4	2.4	3	23	514	535	512	535	0.94
15	18	1.7e-05	0.0026	19.6	0.2	3	23	546	566	544	566	0.97
16	18	3.8e-06	0.00058	21.6	0.7	1	23	572	594	572	594	0.96
17	18	1.9e-05	0.003	19.4	1.0	1	23	600	622	600	622	0.98
18	18	0.0023	0.34	12.9	0.5	1	21	628	648	628	649	0.95

Sequence Information

Coding Sequence: ATGTCTGGAAGGAACCCTGTGAATCCTTCTGGGAGAGAAGATATGTCCTTGAGGGGCCAAAGAGACTTTGGATTATCATTTTTGCTTCTACTTGTGTCATCCTTCAAGTGCGTTGTAATTTTCAGGGAAACAAGCCTGAAAACGACCACCAAGTGTCTCCGAACAGGAAACAAACCGTCCCAAGACAAAGATCTCAAATCGACCGAACGTAGACTGATGAAATTAGTAGTAAAACCAACAGAGCTAGAAACTCCTCTCACCTGCGAATTCTGCCAAGCCACCTTCAACAACAACCTTGACTTCGCCTACCACTCGAAACGTCACAGCGCAGACGGCACCTATTCCTGCCACCTGTGCACCTACCACAACAGCTCCAAGTATCACGTGGAGATGCACGTGAGAGCCCACGAGGGCATCAAAAAGTACCAGTGCCAAATGTGCAGCAAGACCTTCAAGCGAAGCCTGGACGCCGCCGAACACAAGTACTTCCACGCGGGGGAGAAACCATTCCAGTGCGAGATCTGCGGCAAACATTTCAGCTTCACCAGCTCGCTGGTCAACCACAGGCGCCTGTCCCACTACGAGATCCTCACAGGCAACAAGCTGAAGAAGTACGACTGCAAGAAGTGCGACAAGCACTACTCCACCCATTCGGGACTCATCAGACACAACTCCGCCCACCACAAGGAGTTGGGCTGCGACATCTCGGTGCTGTGCGACATCTGTGGTAAACGCATCGCCACCAAGAGCAAGCTGCAGTTCCACCTGCGCACCCACACGGGCGCTAAGCCCTACGTCTGCAAAATATGCCCCAAGGGCTTCGCCAAGAAGGAGCAACTGGCCAGCCATGAGAGGATCCACACTGGCGAGAAGCCCTTCGAGTGCAAGGTTTGCGGTAAGAGGTTCGCGCAGCACTCACCCTTCAACTACCACATGAAGATGCACAACGGGGAGAAGAAGCATGCCTGCAGGTTATGCGGCAGAACGTTCATCGCTCTCAGCAGCATGAAGAATCACATGAAGATATGCGATACTTACAAGAAGCTCAACTCCAAGAAACGGAAATACACGAAGCGGAAACCGGAGAACGTCACCGATCGCAAAAGGCGTCGGCCTCGTGACCCAGCCGAGGAAGCCTTCAAGATAATCGCTAGACCCGCAGACCTGGAGGACCCTCTCGAGTGCAAGCACTGCGAACAGACTTTCACCAACAACCTGGACTACGCGTTCCACTCCAAGAGGCACCACCCTCGAGACCTCTACTCATGCCACCTCTGCCCCTACGAGAACCCCTCGAAGGCCCCCTTCGAGATGCACATGCGCGACCACGAGGGCATCAACAAGTTCAAGTGCCCGCTGTGCGAGAAGACGTTCAAGCAGAGCAAAGACGCCATGGAGCACCGCTTCGCGCACACCGGCGAGAAGCCCTTCCAGTGCGAGATCTGCGGCAAGCACTTTCCGTTCACCAAGAGCCTCTCCTCGCACCGGCGCAACTCCCACTACGAGGTCATCACGGGAAAGCCGCTGAAGAAGTGGGACTGCAAGGTGTGCTCGAGGCACTACGAGAGCCACTCGGGCCTGGTGCGGCACTACTCCTCCATGCACAAGGAGCTCGGCTACAACTACTCGGTGATCTGCGACATTTGTGGCAAGACCATCGCCACCAAGAACAAGCTCAAGTACCACATGAGGGTGCACACTGGGTACAAGCCGCATGCGTGCACCGTTTGCGGCAAGGCCTTCTCCAAGAAGCAGGAGCTCAACATCCACGAGAGGGTGCACACGGGCGAGAAGCCCTTCAGTTGCTCGTACTGCGGGAAGAAGTTTGCTCAACTGGCGCCGTATCGGTACCACATCAAGACCCACACCGGGGAGAAGACCCACGTGTGCATGATTTGCAACAAGGGCTTCATCGCGCTCAGCAACATGAAGATTCACATGAAGCACTGCCGACTGGTGAAGGCAGAACCCGTATAG
Protein Sequence: MSGRNPVNPSGREDMSLRGQRDFGLSFLLLLVSSFKCVVIFRETSLKTTTKCLRTGNKPSQDKDLKSTERRLMKLVVKPTELETPLTCEFCQATFNNNLDFAYHSKRHSADGTYSCHLCTYHNSSKYHVEMHVRAHEGIKKYQCQMCSKTFKRSLDAAEHKYFHAGEKPFQCEICGKHFSFTSSLVNHRRLSHYEILTGNKLKKYDCKKCDKHYSTHSGLIRHNSAHHKELGCDISVLCDICGKRIATKSKLQFHLRTHTGAKPYVCKICPKGFAKKEQLASHERIHTGEKPFECKVCGKRFAQHSPFNYHMKMHNGEKKHACRLCGRTFIALSSMKNHMKICDTYKKLNSKKRKYTKRKPENVTDRKRRRPRDPAEEAFKIIARPADLEDPLECKHCEQTFTNNLDYAFHSKRHHPRDLYSCHLCPYENPSKAPFEMHMRDHEGINKFKCPLCEKTFKQSKDAMEHRFAHTGEKPFQCEICGKHFPFTKSLSSHRRNSHYEVITGKPLKKWDCKVCSRHYESHSGLVRHYSSMHKELGYNYSVICDICGKTIATKNKLKYHMRVHTGYKPHACTVCGKAFSKKQELNIHERVHTGEKPFSCSYCGKKFAQLAPYRYHIKTHTGEKTHVCMICNKGFIALSNMKIHMKHCRLVKAEPV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -