Basic Information

Insect: Chrysomela aeneicollis
Gene Symbol: -
Assembly: GCA_027562985.1
Location: JARUHR010000013.1:5759464-5778701[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00012 0.019 16.9 0.5 1 23 305 327 305 327 0.96

2 12 1.8e-05 0.0028 19.5 1.5 1 23 335 357 335 357 0.99

3 12 2.9e-05 0.0044 18.8 0.5 2 23 365 386 364 386 0.97

4 12 5.8e-05 0.0088 17.9 0.4 1 23 392 414 392 414 0.98

5 12 7.9e-06 0.0012 20.6 2.3 1 23 421 443 421 443 0.99

6 12 4.7e-05 0.0072 18.2 1.4 1 23 449 471 449 471 0.96

7 12 1.2e-05 0.0018 20.1 0.1 1 23 477 499 477 499 0.99

8 12 3.6e-06 0.00055 21.7 1.8 1 23 505 528 505 528 0.96

9 12 5.6e-06 0.00086 21.1 0.6 1 23 534 557 534 557 0.96

10 12 1.2e-05 0.0019 20.0 2.0 1 23 563 585 563 585 0.99

11 12 0.00014 0.022 16.7 0.4 1 23 591 613 591 613 0.94

12 12 0.0019 0.29 13.1 0.1 1 23 619 643 619 643 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00012	0.019	16.9	0.5	1	23	305	327	305	327	0.96
2	12	1.8e-05	0.0028	19.5	1.5	1	23	335	357	335	357	0.99
3	12	2.9e-05	0.0044	18.8	0.5	2	23	365	386	364	386	0.97
4	12	5.8e-05	0.0088	17.9	0.4	1	23	392	414	392	414	0.98
5	12	7.9e-06	0.0012	20.6	2.3	1	23	421	443	421	443	0.99
6	12	4.7e-05	0.0072	18.2	1.4	1	23	449	471	449	471	0.96
7	12	1.2e-05	0.0018	20.1	0.1	1	23	477	499	477	499	0.99
8	12	3.6e-06	0.00055	21.7	1.8	1	23	505	528	505	528	0.96
9	12	5.6e-06	0.00086	21.1	0.6	1	23	534	557	534	557	0.96
10	12	1.2e-05	0.0019	20.0	2.0	1	23	563	585	563	585	0.99
11	12	0.00014	0.022	16.7	0.4	1	23	591	613	591	613	0.94
12	12	0.0019	0.29	13.1	0.1	1	23	619	643	619	643	0.92

Sequence Information

Coding Sequence: ATGTCCACTAATCATGAATACTCATGCCAAATATGCAATGCAGAAGCACTAAGGGATAATAATTGTGTTCTAATTTTTAACAATGAATTTCGATCCAGTTCTAATAAAGATATTGCAACACTCATAAAGAAGCTCTTGTCAAAAGTTATAATAGAAGATCCAAGTATCTCTCAAGTTATTTGCAAGAAATGTTTCACACTTATTATTGAACTGGAAGAGCTGCAGAATAGGGTAGCGGAAATTAAATATGAAATTCTAGAAACTAGCAAAACAGAAGATGAAGACTGTAGTGACAGTGAAATTAAGCAAGATGTGGGTGATGATTTGGGAAGTGAAGAAAATGCTACCAagacatttttattcattccatCATCTGATGAAGATTCAACACCAGTGTCACAGATATCACCAAAAAAGCAAatttctgatgatgttgaaATGCATACAGAAATGGAAAGTGAAACAGCAGAGCAAGCAGAAATTGGCAATGAATTTCAACAGTTATCTGCTGAAGAAATAGATATGCTAGATTCAGGAGCTGTGGAACATTCTTCTGACTCTGACTATGAACCTCCAAAAAGTGTGTTTGTGAAAGTTCAGTCATTGGCTGAGAAAAACAGAaTTGTAGATGTGAATGTAAAAATTGAACCCTCACCTGGTGAAGAGGCTGTTTCAACTTCTGCTCTATCTAATGACAAGAAACCAAATatcttgaagaaaaaaatatttgttcctGTAAATCCTACTATAGAATTAATAACTGAAGAGAGGAAAACTGAAACATTGGACATGCCCTCAGTCCAGAGAGATGGGAATCTGTATACATGTCTATTATGTGAAGGTGATGAAACAGTAGCAGGTGAAGCCAGAGCTATTATGGCTCATGTCAAAGAAGCACATCAGGTGAGGTTGTACATCTGTGATGTTTGTGGGCAAGATTTTTCCAAAAGGAATCACTTATCAGCCCATTTGGATGAGCATATTGAACAGGAAGAGGGCGACTTCCAATGTGAGGTGTGCAATAGAATTTTCAGTAATTTGAGGTTATTCAGAATTCACAGGCGTATGCATTATCCTCAAACCAAAGGGTGGGAGTGCGAAAAATGCGGTAAGCGCTACAGCAGCAAGAACCTGCTGGAGGAGCACTCAAACACCCACCTGGGGGTGCGGCCCTATGTGTGCGGCGCGTGCGGCAAAGACTTTGCTTCCAAGTACACTTTCAGAGCGCATGAAAAGACGCACGAGGCTAGGCCGAGGCCGTTCAAATGTTCGCAGTGCGGAAAGTCGTTTTTGAGCCAGCAAAACTTGACTCAGCATGAACGAACTCATCTCGGCATGAAGGAATTCTCGTGCCACTTATGCGGCAAAAATTTTGGGTCTGCGCACAATCTCGAGGTACACTCGATTGTACACACCGGCTACAAGCCGTACGTGTGCGGTCTGTGTGGGAAAGCGTTCGCACGTAAAGCCGAAATAAGggATCATGAACGTACGCATACAGGAGAGAGACCGTACCAGTGCGAATTTTGCGGGTCAACCTTCAGCCAAAGATCGAACTTGCAGTCCCACAAGAGAGCAACTCATTATGATGATAAGCGCTATCAGTGCAAAGAGTGCGGCAAAGGTTTCAAGAGAAGGCGTCTGCTAGATTATCACATCAAAGCTGCCCATACAGGTGAACGGCCGTTCAAGTGCGAGATCTGCGAGGCGACGTTCGTCTACCCGGAGCACTTCAAGAAGCACCGGCGCATCCACACGGGCGAGAAGCCCTTCCTGTGCGAGGTGTGCGGCAAGGCGTTCAACAGCCGGGACAACAGGAACGCGCACCGCTTCGTGCACTCGGACAAGAAGCCGTACGAGTGCCTCGTGTGCGGCGCAGGGTTCATGCGCAAGCCGCTGCTCTACCAGCACATGCAGTCTCAAGgtcacctcaacgacacgattGTCGTCAACCAACCTAGACTCACCACCGATGATGATCAGATGGTCACCGTCAATTCGGCTGGGGAAATCGAAATTGTGGATGCATCGTCCACGGATTCGAATATATTCATCCAAGACCAAGATGGGGACGAGCACATCATCATCGACGGGCAGCAGATTGGATTCGCACAGGTCGATTCGGATGATGAGGGAAATGAAGAACAAGAAATCATGGAACAGATAGTGGAAGAACATGGCGAAGAAGAGGAATACGAGGAGGTGATAACCGGTGACGCTTTGAGTGAAAGCGACACGCAAATAATCGACACTCCAGAAGGTCCCGTTCAGCTGGTGAAGGTTAGGATTCCCAACGAAAATGGAGAGGAAGAAGAAGCGTGGATCAAGATTATGCAAGAGTAG
Protein Sequence: MSTNHEYSCQICNAEALRDNNCVLIFNNEFRSSSNKDIATLIKKLLSKVIIEDPSISQVICKKCFTLIIELEELQNRVAEIKYEILETSKTEDEDCSDSEIKQDVGDDLGSEENATKTFLFIPSSDEDSTPVSQISPKKQISDDVEMHTEMESETAEQAEIGNEFQQLSAEEIDMLDSGAVEHSSDSDYEPPKSVFVKVQSLAEKNRIVDVNVKIEPSPGEEAVSTSALSNDKKPNILKKKIFVPVNPTIELITEERKTETLDMPSVQRDGNLYTCLLCEGDETVAGEARAIMAHVKEAHQVRLYICDVCGQDFSKRNHLSAHLDEHIEQEEGDFQCEVCNRIFSNLRLFRIHRRMHYPQTKGWECEKCGKRYSSKNLLEEHSNTHLGVRPYVCGACGKDFASKYTFRAHEKTHEARPRPFKCSQCGKSFLSQQNLTQHERTHLGMKEFSCHLCGKNFGSAHNLEVHSIVHTGYKPYVCGLCGKAFARKAEIRDHERTHTGERPYQCEFCGSTFSQRSNLQSHKRATHYDDKRYQCKECGKGFKRRRLLDYHIKAAHTGERPFKCEICEATFVYPEHFKKHRRIHTGEKPFLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGAGFMRKPLLYQHMQSQGHLNDTIVVNQPRLTTDDDQMVTVNSAGEIEIVDASSTDSNIFIQDQDGDEHIIIDGQQIGFAQVDSDDEGNEEQEIMEQIVEEHGEEEEYEEVITGDALSESDTQIIDTPEGPVQLVKVRIPNENGEEEEAWIKIMQE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -