Caen013880.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chrysomela aeneicollis
Gene Symbol
ECU03_0790
Assembly
GCA_027562985.1
Location
JARUHR010000009.1:18180340-18186180[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.12 18 7.5 5.8 2 19 157 174 156 177 0.93
2 17 2.9e-05 0.0045 18.8 1.9 1 23 184 207 184 207 0.91
3 17 4.5 6.8e+02 2.5 8.6 1 19 213 231 213 233 0.94
4 17 0.00056 0.085 14.8 2.8 1 23 256 278 256 278 0.98
5 17 0.00022 0.034 16.1 5.6 1 23 284 306 284 306 0.98
6 17 0.00019 0.029 16.3 1.0 3 23 328 348 326 348 0.92
7 17 0.00018 0.027 16.4 5.9 1 23 352 374 352 374 0.98
8 17 5.1e-05 0.0077 18.1 1.5 1 23 380 402 380 402 0.99
9 17 5.2e-05 0.0079 18.1 1.4 1 23 408 430 408 430 0.99
10 17 0.01 1.6 10.8 3.5 1 23 436 458 436 458 0.96
11 17 2.8e-05 0.0043 18.9 2.0 1 23 523 545 523 545 0.97
12 17 4.5e-06 0.00068 21.4 1.2 2 23 555 576 555 576 0.97
13 17 0.00027 0.042 15.8 0.4 1 23 582 604 582 604 0.93
14 17 3.4e-07 5.2e-05 24.9 1.8 1 23 610 632 610 632 0.98
15 17 4.8e-06 0.00073 21.3 2.5 1 23 638 660 638 660 0.97
16 17 2.4e-05 0.0036 19.1 1.4 1 23 666 688 666 688 0.97
17 17 8.8e-05 0.013 17.3 1.6 1 23 694 716 694 716 0.95

Sequence Information

Coding Sequence
ATGGATCGAGTTAAATCAGCACTCTCAGTCTCAGATTTTCCTGTCATCTGTAGAGTTTGTTTGGCTAGAACAGGAGTGATACCTTTGGAACAGACCCTATCTGAATTATTTTATAAACTTACAAGCATCAAGCTTGATCCAAATAGTAAACTTCCTTGCAATATCTGCAATGACTGTATCAGACAACTCCAGACCATTTGGGACTTCATAGAGCTATCAAAAATTAATAACATAAATTTGCAAAATGTCTACAAAATGCAAACTGAGCAACTTCATCCTACCAAAGGAATTTCTGATACTGAAGGTGAAGATAATAGTTGGGACATGTTATCAGCAAATGGAGATGATTACATTGAACAATCTGATGaacataattttgaaaaaaatgagtttcacATGGAGGTTAAGCCAGACCTACAATTCAAAACAGAAGTGTCTAATAAATATGAAGAAAATGAAAAGACAAATAAATGTAATCTTTGTGATAAGGAATGCTCTCACAAACATAATTTGGATATCCACTCACATTCACAATCAGATGCAGATTCTCATGTTTGCACAACTTGTGGAAAATCTTTCAAATTCATCTCAAATTTGATCAGACACAATAAGGATATTCATAAGAAAGATAAGCCTTTCagatgtgaaatatgtcacaaaGAATTCGCATCATTTCACTCAAGAAAGCAACACTGCTGCAAAGTCTCGAATAATGAAAAACCAGTAGAGCTTAAAGATAGTCCCTTGAATAATAAATACTGTGAATATGAATGTAATACTTGTAGAGAATCATTCAAATCTTTGAGATCCTATAAGCAACATGTtaaaaaccacaaaaatattgAGACATATAAATGTGGAACTTGCCATGagacattttcaaaaaaaaccttACTGGAAAAGCACATTCACCAACATATTCAGGAAGCTTCTTCAGACAGGGAGTTTACAAAGGAAAAACTTGATGACGAAGATCTGGCTTGTGAGCATTGTGGCAAACAGTTTCCCTCTAAAAAAACCCTTTACGACCACATGCCGACACATACCAAGCAGTTCCGGTGCGAAATTTGTGACAAGGTGTGCTCCAAGAGATTCCATCTGGAAAACCATCGTAAACTGCATACGGGGGAAAAACCCTTCCAATGCGAGTTCTGCGAGAAAACTTTCCGGCTGAAAAGTGCTCGCAAGGCGCACCTCAGGGTTCACACCGGCGAGCGTCCTTATCAATGCAGATTATGCAAGAAAACTTTCGCCCAGAAAAGCAACGCTGTTGATCATGAAAGACGTCACACTGGAGATACGCCGTACCTTTGTAGGTTCTGCTCGAAATGGTTCATTCAGAAAACGCATTTGGCGAGACATGAGAGAACGCACGAGGAAGGAAAGGGTCAAAATGATGAAAACGATAAAAATCTATGTAAAGTTGATTTGTACAATCCTAAAGAAACGTCTGGCAAGGATGAGGGATCTGAAATACTGGATgatgattctgGATTTGCTCGCATGGAGAAAAAGAACCTTCACATTAAAATCCATTCGATGAAATCGACAGAGAGTGACATCATCTACTCCTGCAAAAAATGTGAGAAGAATTTCGAACGTAAGGCTGAATACCGCTCGCACATGATCCAACATGGCGAATCTCCGGACATATCTGATGCAAAATGCCGAATATGCAACAAGGTCTTTTCCTCCAAATATAACATGCAAAGCCATATGGTTATTCACAACAAGACCAGAGACTTCTTGTGCAACATCTGCGGAAAAGGATTCTCGAAGAAGGTCTACCTCGACACCCACTCGCTCATCCACTCCGGCGAGAAGCCGTACCAGTGCCGCGAGTGTGGCAAGAGCTTCCGCCAGCGCAGCACCTACAACCGCCACGTGCTGGTGCACACCGACGAGCGCTCCTTCCGCTGCGACCAGTGCGGCAGAGCGTTCCAGCAGAAGACGCACCTCCAGCGGCACCGTGCCGTGCACACGGGCGAGAAGCGGTTCCAGTGCGGCTGCTGCGGCAAGCGCTTCGGCCAGAACGTCAACCTGCAGGCGCATGTCAGGACGCACACGGGCGAGACTGCGCACCATTGTCCGGTGTGCGGCAGGGGATTTTATGACGCCAGCAGCATGAAGAAGCATGCCAAGGGGCATAATAGGGAGGGGGGTGCCTCGGGCTCGGGCGGCCAGTGA
Protein Sequence
MDRVKSALSVSDFPVICRVCLARTGVIPLEQTLSELFYKLTSIKLDPNSKLPCNICNDCIRQLQTIWDFIELSKINNINLQNVYKMQTEQLHPTKGISDTEGEDNSWDMLSANGDDYIEQSDEHNFEKNEFHMEVKPDLQFKTEVSNKYEENEKTNKCNLCDKECSHKHNLDIHSHSQSDADSHVCTTCGKSFKFISNLIRHNKDIHKKDKPFRCEICHKEFASFHSRKQHCCKVSNNEKPVELKDSPLNNKYCEYECNTCRESFKSLRSYKQHVKNHKNIETYKCGTCHETFSKKTLLEKHIHQHIQEASSDREFTKEKLDDEDLACEHCGKQFPSKKTLYDHMPTHTKQFRCEICDKVCSKRFHLENHRKLHTGEKPFQCEFCEKTFRLKSARKAHLRVHTGERPYQCRLCKKTFAQKSNAVDHERRHTGDTPYLCRFCSKWFIQKTHLARHERTHEEGKGQNDENDKNLCKVDLYNPKETSGKDEGSEILDDDSGFARMEKKNLHIKIHSMKSTESDIIYSCKKCEKNFERKAEYRSHMIQHGESPDISDAKCRICNKVFSSKYNMQSHMVIHNKTRDFLCNICGKGFSKKVYLDTHSLIHSGEKPYQCRECGKSFRQRSTYNRHVLVHTDERSFRCDQCGRAFQQKTHLQRHRAVHTGEKRFQCGCCGKRFGQNVNLQAHVRTHTGETAHHCPVCGRGFYDASSMKKHAKGHNREGGASGSGGQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-