Caen014296.1
Basic Information
- Insect
- Chrysomela aeneicollis
- Gene Symbol
- Bcl11a
- Assembly
- GCA_027562985.1
- Location
- JARUHR010000010.1:2521677-2530664[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.012 1.9 10.6 0.0 1 20 175 194 175 196 0.93 2 19 0.0016 0.24 13.4 0.1 1 21 219 239 219 240 0.95 3 19 0.29 45 6.2 3.2 1 23 309 331 309 331 0.97 4 19 3.4e-06 0.00052 21.8 0.8 1 23 337 359 337 359 0.96 5 19 0.074 11 8.1 5.3 1 23 365 387 365 387 0.97 6 19 0.00031 0.047 15.6 1.5 1 23 393 415 393 415 0.98 7 19 0.0002 0.031 16.2 3.7 1 23 420 442 420 442 0.98 8 19 0.0022 0.34 12.9 1.1 2 23 475 496 474 496 0.96 9 19 5.5e-07 8.4e-05 24.3 0.8 1 23 502 524 502 524 0.97 10 19 0.084 13 8.0 3.5 1 23 530 552 530 552 0.97 11 19 0.018 2.7 10.1 0.9 1 23 558 580 558 580 0.88 12 19 0.0064 0.97 11.5 4.5 2 23 617 638 616 638 0.97 13 19 3.4e-05 0.0052 18.6 3.5 2 23 643 664 642 664 0.97 14 19 0.0033 0.51 12.4 0.9 1 23 669 691 669 691 0.97 15 19 7.8e-05 0.012 17.5 0.0 1 23 697 720 697 720 0.94 16 19 0.00018 0.028 16.3 0.7 2 23 728 749 727 749 0.96 17 19 0.00015 0.023 16.6 0.6 1 23 755 777 755 777 0.98 18 19 6.3e-06 0.00096 20.9 0.9 1 23 783 805 783 805 0.97 19 19 0.00088 0.13 14.2 0.8 1 23 812 835 812 835 0.92
Sequence Information
- Coding Sequence
- ATGAAAGTGAAAAGAGGATGTTCTAATCGTTGTGCAGTTCGTGGTTGTCATTCCAATTATCAGAAATTTAATGGGGACATGCATCTCTTTCGATTTCCCAAAGACATTAATAGgTGTAAAGAATGGGCAAAGAAATGTGGCATCTTAGAAATTTTCCAAGACAATTTGAATGCCTTATATACTTCTGTTTATAGAGTTTGTTCATCACATTTTGAAGATAAAATGTTTAAAGGACTACTAAAAAAGAGGCTCACTAAAACTGCACTACCAACTTTACAATTGAGTCAATCACTTCAAGATGATTCTGGCACAATCATATTTAAACAAGATAATCAACCAGATGGGGAGGAAGCTGCTACCATgGAACCTATTATCAGGCATGACATTAAAAAAGAACTAACTGAAGATACAATAAAAGTTGAGCCCACAGAGattgaaaatactgatgaacaggataaaattgaaattgatataaaatatcaaatattcaaCACAGTGAAACAAGAACCAACCAACAAACAACATGTATGTGAAGTTTGCAATGAAACTTTTGAGACTGAATTAGAATTGAATGAACACACAATTGAAAATCCTGGATGCAAACATCAGCAGGCTTATATTAAAGATGAACCACAAGATGAAACAGAAGACATCTATGTGTGTTCTGTATGCAATGAAATGTATGAGAGCAAGGAAGAATTGATAAATCATAAAAAAGAGACAGCAATATGTCATGAACACAAGATATGTGACAAATGTGAGGTTAAATCTGAAACTTCTGAAAGTGACTTCACATGTACCTGGGAGTTGGATGATCATCTGAGGACTGCTCATGGAGTGCAAGATAGAGATGATTGGGCGACGCATGGAATCCGAGCGCAAATAAACGATGAGGACCCCGAATCGCGCGGAGAAAAAAAACGCTATCCATGTCGTTTCTGTCCCAAACTGCTGAAGAGGTCCCATCTGCGGACGCGCCACGAGAGGCTCCATACCGGCGAAAAACCTCACCAATGTTTAGTTTGTGGGAAGTCTTTCTCCTCCACGTCCAATCTGCGTGACCACGAGGCGATCCATTCAGGACAGAAACGTTACTCTTGCAAGTTCTGTGACAAAACGTTCATATGCAACACCAACAGGAAGAGACACGAGCAAGTTCATGCGGGCGGGAAATCTTTCATGTGTCAATTCTGCGATCAATTTTTCCCATCGAGGGTTTCGCTCAAAGCGCATAAAAGCACCCACTCTGAGACACCTTACACCTGCAAGTTCTGCCCTAGATCGTTCAGGTCCAGGTACAATCGAAGTAGGCACGAGAAGGTTCATTCGGGTGATGAGCCTGTGGTGTTGGAGAAAATTCGTGACTCGTTTCAACCCACCAAAGCGAAGTGCAAAGAAGACGAGACCAGACTCAACTACCTGTCATGCGATGACTGCCCCAAGTCGTTTTCCTGCGATGCAAAGTTGCAGGTGCATCGGAGAGTCCATACGGGAGAAAAACCGTTCACGTGCGGTATCTGTGATAAATCGTTCACCACCAACTCGGTTCTCAAGAAGCACCAGGACATCCACTCTGGCGAGAAACCATTCTCGTGCAGCTTCTGCTCCAAAGCGTTCATATCCAATTGCAAGAAGATCCAACATGAGAGAGTCCACACTGGAGAGAAGCCCTATCTGTGCAGATATTGCGATAAGTCTTTCTCGACTATGTCCATTGCCAACGATCATGAGAAGACTCATACAGGAGAGCGACCTCATACGTGCCAGATCTACGCCCTGTCACTCTTCGTAATGCAAGAACCAGACAACCCGACGCGGAAGAACAACCGCCCGGGCAAGGGGCACCTGAGGTGCCGGTTCTGCCCCAAGTCGTTCCACCATGCCGCCAGCTTTCAGATGCACGAGAGGATGCACACTGACACGAAGCAGTGCGCCCACTGCGGCAAGACCTTCTACACCCACGCCCTGCTCAAGAAGCACCTCGAGATCCACTCGCGCAAGAATTTCGCGTGCAAGTTCTGCCCCAAATCGTTCCTCTTCAGCTCCAAGCTGGCGATTCACGAGAGATCGCACACGGGAGAGAAGCCCTACCGGTGTCCGGTGTGCGAGAAGTCTTTCACGGCCAGCTGGGGCCTCAAGGAACACATCGAGGGGGTGCACGGCACAGGGGAGGAGGCGGTGCCCTGCGGCTCCTGCCGCAAGTCCTTCACCAGCATCGCCAAATTAAGGCGACACGAGCGCACCCACGACGGGGCGAGGCCCTATCAGTGCCGCTTTTGCGAAAAGACGTTCGCCGACGGGTGGAACTTGAAAATACACGAGAGACAGCACACCGGTGAGAGGCCCTTCGCCTGTGGGACTTGTGACGAGAAGTTCACCCGCAAGTCTGCGCTGAGCAAACACGAGAGGTCGCATACTGATGAAGAGCGGCCCCATGTTTGCGATGTTTGTAAAGCGGGGTACACGAGGGAGTCCTCGCTGAAGAGGCACAAGATACAAGTTCATGCGAGTGTggatcactga
- Protein Sequence
- MKVKRGCSNRCAVRGCHSNYQKFNGDMHLFRFPKDINRCKEWAKKCGILEIFQDNLNALYTSVYRVCSSHFEDKMFKGLLKKRLTKTALPTLQLSQSLQDDSGTIIFKQDNQPDGEEAATMEPIIRHDIKKELTEDTIKVEPTEIENTDEQDKIEIDIKYQIFNTVKQEPTNKQHVCEVCNETFETELELNEHTIENPGCKHQQAYIKDEPQDETEDIYVCSVCNEMYESKEELINHKKETAICHEHKICDKCEVKSETSESDFTCTWELDDHLRTAHGVQDRDDWATHGIRAQINDEDPESRGEKKRYPCRFCPKLLKRSHLRTRHERLHTGEKPHQCLVCGKSFSSTSNLRDHEAIHSGQKRYSCKFCDKTFICNTNRKRHEQVHAGGKSFMCQFCDQFFPSRVSLKAHKSTHSETPYTCKFCPRSFRSRYNRSRHEKVHSGDEPVVLEKIRDSFQPTKAKCKEDETRLNYLSCDDCPKSFSCDAKLQVHRRVHTGEKPFTCGICDKSFTTNSVLKKHQDIHSGEKPFSCSFCSKAFISNCKKIQHERVHTGEKPYLCRYCDKSFSTMSIANDHEKTHTGERPHTCQIYALSLFVMQEPDNPTRKNNRPGKGHLRCRFCPKSFHHAASFQMHERMHTDTKQCAHCGKTFYTHALLKKHLEIHSRKNFACKFCPKSFLFSSKLAIHERSHTGEKPYRCPVCEKSFTASWGLKEHIEGVHGTGEEAVPCGSCRKSFTSIAKLRRHERTHDGARPYQCRFCEKTFADGWNLKIHERQHTGERPFACGTCDEKFTRKSALSKHERSHTDEERPHVCDVCKAGYTRESSLKRHKIQVHASVDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00330676;
- 90% Identity
- iTF_00330676;
- 80% Identity
- iTF_00330676;