Caen013106.2
Basic Information
- Insect
- Chrysomela aeneicollis
- Gene Symbol
- -
- Assembly
- GCA_027562985.1
- Location
- JARUHR010000009.1:5931489-5940377[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5.5e-05 0.0084 18.0 0.1 2 23 201 223 200 223 0.95 2 13 0.0029 0.44 12.6 0.3 2 23 257 279 256 279 0.95 3 13 0.00024 0.037 16.0 2.3 1 23 285 307 285 307 0.98 4 13 0.00025 0.037 15.9 1.0 2 20 313 331 312 332 0.95 5 13 5.9e-06 0.00089 21.0 0.6 1 23 344 366 344 366 0.98 6 13 6.7e-06 0.001 20.9 1.8 1 23 376 398 376 398 0.99 7 13 5.8e-06 0.00089 21.0 0.5 1 23 404 426 404 426 0.98 8 13 0.0012 0.19 13.7 5.0 1 23 432 454 432 454 0.97 9 13 7.6e-05 0.012 17.5 6.0 1 23 460 482 460 482 0.94 10 13 0.0001 0.016 17.1 3.8 1 23 488 511 488 511 0.96 11 13 6.1e-06 0.00093 21.0 0.3 2 23 518 539 517 539 0.96 12 13 7.1e-07 0.00011 23.9 0.1 1 23 545 567 545 567 0.98 13 13 3.3e-05 0.005 18.7 3.6 2 23 574 596 573 596 0.94
Sequence Information
- Coding Sequence
- ATGGATGGGTCTTCGATCATCGCACAACTTAAAAAGGAAGCAGATGTGAAAACGGAAAAATTAGAAacatttgaaatcaatgaacCAGAAGTTCAATTAGTCGATTTACAAGAACACATAGAAGAAGCAGTTCCCACTACAgtagttctacaaaatattgaGATTCATAATGAAAATGAGCTTCCTATCATTTTACATGATTTCCGAAACAACTCTGATGGAAACCTACAGATTAATGGTATTGGTTCCTTAGAGGACAATGTAATCCATACCTACATTATTGAAGGTGATTATGATGATGTCAATAATCAGGAAATAATATATGATGAAGTGGGTGAAGATGATGAAAATACTGTACATTATGTTATCCAAGAAGACAATGAATATGAAGAAAGTACAGTTGAAATATCTGAAGTAAGCAACCATCAGACAGTCAGATACACCTTTCAGGAGTTAGAAGAGTCTGTTGATGATCCTGAACCTGATGATGAAGATGTATCTTCTGGTGAACAAACTAACCAAGAAGAAAACATGCAGGTACACAAACAAActgatgaaaaaatcaagttgtCATTCAtcaagagtgaggaggatataaTTGAATGTGATAATTGCCCAAGATATTTCAGGACTGCTGCAGCACTCAAAAGACATATTACAGTAAATCACCAAGCTAACAACGAATTGGATGAAGAAGACCCATTGACCTTGAGATTATGCATATGTTGTGGGGAACCTTCAGATTCTGGACATACTGTTGGTGATATTGAATGTGAAGAATGTGATAaaaaatttcttcaaataaacttCTTGCAACGTCACATGAGCATTGAACATCCTATCAATGATCAATATACATGTTCAGATTGCAAGAAAGTGTTTAAGATCAAAGAAGAGTTGATCTGTCATATGAAGGTCCATCCTGTTAAGACTGTAAAGTGCCTTGATTGTAATAGAGAATTTAGTAGGAAATATCACTTGGATAGACATACAGGTCAAACCGGATGTATGGGATGCCCTAGGAAGGCATATGAATGTAGAGTGTGCAAAAAATTGTTCACCCGTAAGGACAATTTGGCTGAACATTTGAGAGCCCATGCAGGTCAGggcaagaagaagaagaggtaTACATGTGAATATTGCAATAAAGAGTTTCATGGTCTATCTTTGCTGACTATTCACATAAGAACACACACAGGTGAGAAGCCATATCCTTGTGACCTTTGTTCCAAAAGTTTTCCTTCAAGTGGGGCTATGAAAAAGCATCGGCGAATGCATACAGGAGAAAAACCATATAGATGTGATAAGTGTGACAAGCATTTCGCGGCGAAAGAGACCCTCAACCGGCACTGCCGCATCCACACCGGTGAGAAGCCGCACTGTTGCCAGTTTTGCGGCAAGTCGTTCATCCAACCGTCCCAGCTGCGCGCGCACATCTTCCACCACACCGGCGAGAACGCGTACACGTGCCACTATTGTGGGCGTGCCTTCAACCGTAGACTCAGGCTGACCACCCACATCAAGTTCATGCATGAGGGTGCAGAACCATTGCCTTGCGAACAGTGTGACAAGACGTTCTACAGGAAGGAGGATGTTGCCAGACATATGTTGTCGCACAGTTCAAAAAAATCGTTCGTGTGCGACGTGTGCGACAAAGCCTTTGCCGTCAAGTCCTCCCTCAAGATCCACCAGCTGACGCACAAGAAGGAGCAGCCGTGCAGCTGCGAAACGTGCGGCCGCGCGTTCATCCGCAAGGACTGCCTGATGCGGCACATCCGCGCCCGCCACCGCGACGTCCTCGAGGACATCATGGCGAACGCGGAGAAGAAGCGGCTGCAGCGCCAGCTGCTCTGCGCCGCGACGTCCGCCGCGACGTCGGACAGCCACATCTGGAGCGAGCTGACGCTCACCGAGTCGGTGAAGGAGCTGCTCACGCTGTTGGTCGACGAGGACTGTTTGGTGGAGTTCGGGTACCCGGACGCGCCTGTCGACAGGGTATTGGATTGCGTGATAAGGAGGTGCGGTTACAAACCTGCTTCGGAAGAAGATTTCGACTATATAGGACGCATGAGGGAGAACGCCAAACTGTTATTCACAGTTGTCATCGACGATGAAGCTGTCAAGGAGTTGTTGAACAACCAAACGGTGGACGAAGTTATATTGCACGTTCTTAGGCTAGCGAAAAAAGACCATATTTAG
- Protein Sequence
- MDGSSIIAQLKKEADVKTEKLETFEINEPEVQLVDLQEHIEEAVPTTVVLQNIEIHNENELPIILHDFRNNSDGNLQINGIGSLEDNVIHTYIIEGDYDDVNNQEIIYDEVGEDDENTVHYVIQEDNEYEESTVEISEVSNHQTVRYTFQELEESVDDPEPDDEDVSSGEQTNQEENMQVHKQTDEKIKLSFIKSEEDIIECDNCPRYFRTAAALKRHITVNHQANNELDEEDPLTLRLCICCGEPSDSGHTVGDIECEECDKKFLQINFLQRHMSIEHPINDQYTCSDCKKVFKIKEELICHMKVHPVKTVKCLDCNREFSRKYHLDRHTGQTGCMGCPRKAYECRVCKKLFTRKDNLAEHLRAHAGQGKKKKRYTCEYCNKEFHGLSLLTIHIRTHTGEKPYPCDLCSKSFPSSGAMKKHRRMHTGEKPYRCDKCDKHFAAKETLNRHCRIHTGEKPHCCQFCGKSFIQPSQLRAHIFHHTGENAYTCHYCGRAFNRRLRLTTHIKFMHEGAEPLPCEQCDKTFYRKEDVARHMLSHSSKKSFVCDVCDKAFAVKSSLKIHQLTHKKEQPCSCETCGRAFIRKDCLMRHIRARHRDVLEDIMANAEKKRLQRQLLCAATSAATSDSHIWSELTLTESVKELLTLLVDEDCLVEFGYPDAPVDRVLDCVIRRCGYKPASEEDFDYIGRMRENAKLLFTVVIDDEAVKELLNNQTVDEVILHVLRLAKKDHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -