Caen037087.1
Basic Information
- Insect
- Chrysomela aeneicollis
- Gene Symbol
- -
- Assembly
- GCA_027562985.1
- Location
- JARUHR010000059.1:1147126-1150448[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.89 1.4e+02 4.7 0.6 2 17 12 27 11 31 0.89 2 25 0.11 17 7.6 4.7 1 23 37 59 37 59 0.98 3 25 0.0036 0.55 12.3 1.4 1 23 62 84 62 84 0.90 4 25 0.0003 0.046 15.6 0.7 1 23 90 113 90 113 0.96 5 25 0.0012 0.18 13.8 5.5 1 23 122 144 122 145 0.95 6 25 4.4e-05 0.0067 18.3 0.2 2 23 155 176 154 176 0.96 7 25 3.3e-05 0.0051 18.7 4.6 1 23 182 204 182 204 0.97 8 25 0.032 4.9 9.3 0.4 1 11 210 220 210 226 0.87 9 25 0.079 12 8.0 5.4 2 23 267 288 266 288 0.96 10 25 0.0045 0.69 12.0 4.8 1 23 292 314 292 314 0.97 11 25 0.0053 0.81 11.7 1.0 1 23 317 339 317 339 0.91 12 25 0.021 3.2 9.9 0.3 1 23 345 368 345 368 0.91 13 25 0.00048 0.073 15.0 2.8 1 23 380 403 380 403 0.95 14 25 0.012 1.8 10.6 0.1 2 23 413 434 412 434 0.96 15 25 0.00019 0.03 16.3 3.3 1 23 440 462 440 462 0.99 16 25 0.0021 0.32 13.0 2.3 1 23 468 490 468 490 0.98 17 25 0.021 3.1 9.9 0.3 1 14 496 509 496 510 0.90 18 25 7.1 1.1e+03 1.9 0.4 2 13 541 552 540 562 0.79 19 25 0.00095 0.14 14.1 1.1 1 19 593 611 593 611 0.93 20 25 3.5e-05 0.0053 18.6 0.3 1 23 619 642 619 642 0.97 21 25 0.023 3.5 9.7 5.4 1 23 652 675 652 675 0.96 22 25 0.00096 0.15 14.1 2.3 2 23 685 706 684 706 0.97 23 25 4.1e-05 0.0063 18.4 1.1 1 23 712 734 712 734 0.98 24 25 0.0024 0.36 12.8 0.3 1 23 740 762 740 762 0.98 25 25 6.6e-05 0.01 17.7 0.4 2 21 769 788 768 789 0.93
Sequence Information
- Coding Sequence
- ATGACCAAACTCTTAGGAATCAAAGACCCTCTAAGTTGCCCATCATGTGAGGCTTCTTTCACAGATCACCACAGCCTCGCTTTCCACTCGAAATGTCATTCCAAGATCTTCTCCTGCCACATATGTGGCTTCCAATGCGGTGCCAAACGCAACATCCGCAATCACCTAAAGAGGCACGAAGGTTACAAGTGCCAGGTTTGCGGCAAGTTCTTCAAGAAAGCCGATACTGCCCTGTTACATTCCTACAGACACAGCGGCGTTAAAAACTTCAAGTGCGAGGTTTGCAGTTCTCGCTTCTCGAACCCCAAGTATTTGGCTTCACACAGACGGGACGTCCACACCAAAAAGCTGAAGTCGATCACGTACGATTGTACCAAATGCTCGAAGAAGTATGCAAGCAAGCAAACCCTTCAAAGGCACTTCTCCACCCACCACAAGGAGATGGGGGTGGACATGTCGCTGATCTGCGAAGTGTGCGGGAAAACTTTGGCCACCAACTCGAGTTATAACCTCCACTTGAGGTCCCACACCGGGCAGAAACCCCACAATTGCTCTTTCTGCGCGAAGAGTTTCGGCACCAAAAGCAAGTTGAGGAGTCACATGCGGACACACACGGGAGAGAAGCCGTACAAATGTCCCGTTTGTGGAAAAAACTTTGGTTACGCCGCTCCATTCAGaGAGTCTAAGAAGAACAAACTGAAGAAGGAAGTTGTGAAACAGAAAAAAGAATCGAATCATGAACCCTCAATCAATGAGGTGTCCATCATCACGAACCTCCTGGGCATCACAGAACCCCTGAGTTGCAATTCGTGCTCCACCAGCTTCACAGATCACCACAGCCTGGCGTACCATTCGAAGAAGCACATGAAAGGCTTCGCTTGTCACATCTGCGACTTCAGGTGCAAACCCAAGTACCAAATCCGTAGACACATCAACAGCCACGGCGGCTACAAGTGCCTGGTCTGCGACAAACATTTCAAGAGAGCAGGTACAGCCCTGGTCCACTCCTACATACACGGAGAGGAAAAACGGTTCAAGTGCCAGCCTTGTGGAACGAGCTATGTGAGCCCGCAGCAGTTGAGCGCTCACAACTACAAGGTGCACAAACGGAAACTCGTGGCCAAAGCCCCTGTTATCTATGAGTGCGACAAGTGCAACAAGAAGTATGGCTCCAAGCAAACGCTTCAGAGGCATTTCTCCAGCAACCATCAGGAAATGGGGGTGGACCTTTCGCTCATATGTGAGGTGTGTGGGAAGAGGATGGAGACGAGAGCCAGCTATAGCATCCACGTGCGTATGCATACCGGACACAAACCTTACAAGTGCTCTTTTTGCGACAAGAGCTTCGCCGCCAGATGTCGGCTGACTACCCATATCAGGGTACATACTGGGGAGAAACCATACATGTGCTCGTTTTGTGGAAAGAAATTCGGGCAGCATGCTCCCTACTGGTACCATCTGAAGACCCACACCAACGAGAAGAAACATGCTTGCAAAATTTGTGGCAAGAGATTCATCTCTCAGAGCAGAAGGGGGACCAAATCAGCCCAAACCAACCACAGAATCGCCAGGGAGAAGCAGAACAAAATCCAAAACCTCTTCGAAATCCAAGAGCCCATCCAGTGCGCCCTCTGCAAGCAATCCTTCGAAACAACCCTGGATTACGCCTTCCACTCGAAATACCACAACAAAGAGGGCCACTACACCTGTCACTTCTGCCTGAAGCGGCACCTTAAGAAAGACCACTTCAGGAAGCACGTAATGTCGCACGACGGCTTCAGGTGCGAGCAATGCAACAAGGTCTTCAAGAGAAAGTCCACCGCGTTGAATCACCCGCACAAGTGGGAGAAGCTGTACCAGTGCAGCGTCTGCGGCAAGACCTTGGGCTCCTCCTACAGCCTCAACACCCACCTGAGCAGCGTGCATGAGGTCAGCGGGCTGCCTCCGTCCAAGCACCAGTGCAGCATCTGCCAGAAGCACTACCGGTACGAGACCGGTCTCAAGTTGCACTACTCGAGCAGGCACAAGGAATTCGGCATCGACTACTCCGTCGTATGCGACGTCTGCGGCAAGAAGCTGTCGTGCAAGAGCAAGCTGACGCAGCACTTGCGCACCCACAGCGGGGTGAAGCCCTTCTCTTGCACCGTCTGCGCCAGGAGATTCACCACCAAGGACCTGATGACCTCGCACCTGAGGGTGCACACGGGGGAGAAACCCTACGTGTGCATGTACTGCGGTAAGGAGTTCGGTCAAGGGGCCCCCTACCGATACCACCTGAAGACCCATACGGGGGAGAAGTCCTGCAGTTGCCCCATTTGCGGCAAGCAGTTTATTTCGAAGGGGAACATGAGGATACACGTCAAGAGCTGCAGCATGGGCAACGGTAGAGATGCCACAGACCAGGTTATGCTTGGATGGAACAAGATCAAAGCGGAGGTGGCTGAGGTGGAGGAAAAGGATCCTAGTTCGCCTGACTAG
- Protein Sequence
- MTKLLGIKDPLSCPSCEASFTDHHSLAFHSKCHSKIFSCHICGFQCGAKRNIRNHLKRHEGYKCQVCGKFFKKADTALLHSYRHSGVKNFKCEVCSSRFSNPKYLASHRRDVHTKKLKSITYDCTKCSKKYASKQTLQRHFSTHHKEMGVDMSLICEVCGKTLATNSSYNLHLRSHTGQKPHNCSFCAKSFGTKSKLRSHMRTHTGEKPYKCPVCGKNFGYAAPFRESKKNKLKKEVVKQKKESNHEPSINEVSIITNLLGITEPLSCNSCSTSFTDHHSLAYHSKKHMKGFACHICDFRCKPKYQIRRHINSHGGYKCLVCDKHFKRAGTALVHSYIHGEEKRFKCQPCGTSYVSPQQLSAHNYKVHKRKLVAKAPVIYECDKCNKKYGSKQTLQRHFSSNHQEMGVDLSLICEVCGKRMETRASYSIHVRMHTGHKPYKCSFCDKSFAARCRLTTHIRVHTGEKPYMCSFCGKKFGQHAPYWYHLKTHTNEKKHACKICGKRFISQSRRGTKSAQTNHRIAREKQNKIQNLFEIQEPIQCALCKQSFETTLDYAFHSKYHNKEGHYTCHFCLKRHLKKDHFRKHVMSHDGFRCEQCNKVFKRKSTALNHPHKWEKLYQCSVCGKTLGSSYSLNTHLSSVHEVSGLPPSKHQCSICQKHYRYETGLKLHYSSRHKEFGIDYSVVCDVCGKKLSCKSKLTQHLRTHSGVKPFSCTVCARRFTTKDLMTSHLRVHTGEKPYVCMYCGKEFGQGAPYRYHLKTHTGEKSCSCPICGKQFISKGNMRIHVKSCSMGNGRDATDQVMLGWNKIKAEVAEVEEKDPSSPD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -