Basic Information

Insect: Chrysomela aeneicollis
Gene Symbol: -
Assembly: GCA_027562985.1
Location: JARUHR010000084.1:224226-227636[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 1.8 2.7e+02 3.8 0.2 1 23 198 221 198 221 0.93

2 16 4.1e-05 0.0063 18.4 1.6 1 23 265 287 265 287 0.98

3 16 8e-05 0.012 17.5 4.0 1 23 293 316 293 316 0.96

4 16 2.4e-05 0.0037 19.1 0.7 1 23 322 344 322 344 0.98

5 16 7.4e-07 0.00011 23.9 0.8 1 23 350 372 350 372 0.98

6 16 0.0001 0.016 17.1 0.5 1 23 378 400 378 400 0.98

7 16 5.1e-06 0.00078 21.2 1.5 1 23 406 428 406 428 0.98

8 16 0.36 55 6.0 0.5 1 13 434 446 434 448 0.90

9 16 0.014 2.1 10.4 0.5 2 22 489 509 488 509 0.93

10 16 0.0019 0.29 13.1 2.5 1 23 529 552 529 552 0.96

11 16 5.8e-05 0.0088 17.9 0.8 1 23 580 602 580 602 0.99

12 16 2.6e-05 0.004 19.0 3.5 1 23 608 631 608 631 0.93

13 16 2.8e-05 0.0042 18.9 0.4 1 23 637 659 637 659 0.98

14 16 1.1e-06 0.00016 23.4 0.7 1 23 665 687 665 687 0.97

15 16 5.3e-06 0.00081 21.2 2.1 1 23 693 715 693 715 0.98

16 16 0.00068 0.1 14.5 1.1 3 23 723 743 721 743 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	1.8	2.7e+02	3.8	0.2	1	23	198	221	198	221	0.93
2	16	4.1e-05	0.0063	18.4	1.6	1	23	265	287	265	287	0.98
3	16	8e-05	0.012	17.5	4.0	1	23	293	316	293	316	0.96
4	16	2.4e-05	0.0037	19.1	0.7	1	23	322	344	322	344	0.98
5	16	7.4e-07	0.00011	23.9	0.8	1	23	350	372	350	372	0.98
6	16	0.0001	0.016	17.1	0.5	1	23	378	400	378	400	0.98
7	16	5.1e-06	0.00078	21.2	1.5	1	23	406	428	406	428	0.98
8	16	0.36	55	6.0	0.5	1	13	434	446	434	448	0.90
9	16	0.014	2.1	10.4	0.5	2	22	489	509	488	509	0.93
10	16	0.0019	0.29	13.1	2.5	1	23	529	552	529	552	0.96
11	16	5.8e-05	0.0088	17.9	0.8	1	23	580	602	580	602	0.99
12	16	2.6e-05	0.004	19.0	3.5	1	23	608	631	608	631	0.93
13	16	2.8e-05	0.0042	18.9	0.4	1	23	637	659	637	659	0.98
14	16	1.1e-06	0.00016	23.4	0.7	1	23	665	687	665	687	0.97
15	16	5.3e-06	0.00081	21.2	2.1	1	23	693	715	693	715	0.98
16	16	0.00068	0.1	14.5	1.1	3	23	723	743	721	743	0.97

Sequence Information

Coding Sequence: ATGGAAGATGACAAAGAATATGTTTTGATGGATATGTCTTCCGAGAACGAAGTAACCAACCAAACAGAATTTATCAGTGTGAATGTGATATGCAGACTTTGTGCTAACCAGAACGATAAACTCATAGGAATATACAGCGAAGATGGTGTCAATAACGATTTGGCGAATAAAATGAACCTGTATCTTCCAGTTAAAGTTTATGAAACAGACGATCTACCACTTCAATGCTGTTGGCAGTGTGCATCCACGGTTCTAGCTTGGCATGAGTTGGTTGTGGCCAGCATTGAGGCAGACCGGAGACTGAGAAGCTGCCATTTTGTGACCACAAAAGAATTACAAGAAAGTATCAACCAAGAAGTGGTAGCAAACCTACAGCAACAAGAAAATGAGGAAGAATTCAAGATTGAGCCTAGAGAAACAGATGTAAAAGTGGTTTCTCCAAAGCTACCTGATTTGCAGACATCCAACTGTTCAGAATATATGAACTTGGAATCCTCCTATTCCCAGGTAATCATCCAAGAAGAAACAAAAATTGTTGAGACTCAACACaatgatgctgatgataatGGTGAGGAGGAAGAGGATGCATTTCACAGATGTGAATTATGTCAGGTAGTTACTCAAAATGAACAGGAGATGATAGATCATGTCAAAGAAGAACATCCTGGAATTTTAAGCCCTTCTAAAAAGACAAAAGTCAACAAAAGGGTGAAAAATAACAAGCCAAAACAAACTAAGATTGATAAAGAACTGTTGGAATCTGCAAAAGTAATTGTTGAGGGCAAAATTTATTACAATTGCAAAGAGTGTGGCAGAAGTCTTCATTCCCCTTATACATTTATGTGGCATATGCGTATCCACACTGGGGAACGCCCCCATACTTGTCAAACATGTGGCAAGTGCTTTAGAGTTTCTCAAGGGCTAGTTCGACATTTGAGAGAGACTCACCAAGGCATTAAAAACTTCTCATGTGATTTGTGTGGTAGACAGTTTGCTACAAGGCGTAATGTCCAGGAGCACAGAAGAATACACACCAATGAGAGACCTTATGTTTGTGATTTATGTGGTAAATCTTTCAAACAAAAGGCCTCCTTATTTGTTCACAACCGCTCCCATAGTGACTACTTCCCCTATTCATGTACATATTGTAATCAAGCTTTCCGTACCAAGCCACCTCTGCTTATACACATCACTAAACATACTGGAGAGAAGCCCTATCCATGTGATATTTGTGGTAGGCACTTTAGGATAAAATATGAGTTGAAGAGACATAGATTGGTGCATTCTGAGGAAAAACCATTTGCCTGTGACTCTTGTGGCATGACTTTTAAACAAAAAAGAGGATGTCAAGACTTCCAAGACAAACTTAGCATAGAGACACAAGATAATACTATACTATTACCGACAGAACCAGAACCACTTCCAAACAAACCTCCAAGTCCCCAAGCCGACACCCTTTCGAAATCATGCGACCTGTGCGACAGCCATTTCGACTCAGAGAGCGAATTACAAACGCACCTCTCGACTTGCCCCAGCCAGAGACGGCCTAGATTCAGAAGGAAAAAATCCGACATTGACGCCCCATTCGCTTGCCCGGCTTGCGCCAAGAGCTTCACGAGGAAATTCGACATGCACAAGCACGTCAAGTCGAAACACCCGGCGGAAGCCCGCAGCGTAGAACCGTCGAAGAGGAGACAGAACCTGGAGGCAATCGAGAAATGCAGAATCGAAGGCGCGTACCGCTGCGACATCTGCCGGGAGGAGTTCAAGGACGCGCTATTGCTCTCTCGCCACCGGAAAACGCACCTGGAAAGGAAGCCGCACGAATGCAAGCTCTGCGGGAGGGCGTTTAAATCCGCGGCGCACCTGAAGCGCCATGTGGAGCACCTCCACAGGGGTGTCAGGAACTTCACCTGCGGCGTCTGCGAACGGCGCTTTGCCACCAAATTCAGCCTCGAGGAGCACCTCAACGTCCACATGGACTACAGGCCGTTTGTTTGCGAGGTTTGCGGCAAGGCGTTCAAGCAGAAGTCGTCGCTGTACGTGCACAGGCTGTACCATGGCGATACATTTCCTTTTTCCTGCGATCTGTGCCACAGGAGGTTTAGGCGCAGGGGGGAGCTGGTCGTGCACCAGAGGATCCACACGGGGGCCAGGCCCTACGGTTGCGGGGTGTGCGATAAAAGGTTTCGGTTGGGGCACGATTTGAAGAGGCATGTGAAGATCCACGAGAAGAATAAGCAGGTGGAAGCCGGGGGAAAATGA
Protein Sequence: MEDDKEYVLMDMSSENEVTNQTEFISVNVICRLCANQNDKLIGIYSEDGVNNDLANKMNLYLPVKVYETDDLPLQCCWQCASTVLAWHELVVASIEADRRLRSCHFVTTKELQESINQEVVANLQQQENEEEFKIEPRETDVKVVSPKLPDLQTSNCSEYMNLESSYSQVIIQEETKIVETQHNDADDNGEEEEDAFHRCELCQVVTQNEQEMIDHVKEEHPGILSPSKKTKVNKRVKNNKPKQTKIDKELLESAKVIVEGKIYYNCKECGRSLHSPYTFMWHMRIHTGERPHTCQTCGKCFRVSQGLVRHLRETHQGIKNFSCDLCGRQFATRRNVQEHRRIHTNERPYVCDLCGKSFKQKASLFVHNRSHSDYFPYSCTYCNQAFRTKPPLLIHITKHTGEKPYPCDICGRHFRIKYELKRHRLVHSEEKPFACDSCGMTFKQKRGCQDFQDKLSIETQDNTILLPTEPEPLPNKPPSPQADTLSKSCDLCDSHFDSESELQTHLSTCPSQRRPRFRRKKSDIDAPFACPACAKSFTRKFDMHKHVKSKHPAEARSVEPSKRRQNLEAIEKCRIEGAYRCDICREEFKDALLLSRHRKTHLERKPHECKLCGRAFKSAAHLKRHVEHLHRGVRNFTCGVCERRFATKFSLEEHLNVHMDYRPFVCEVCGKAFKQKSSLYVHRLYHGDTFPFSCDLCHRRFRRRGELVVHQRIHTGARPYGCGVCDKRFRLGHDLKRHVKIHEKNKQVEAGGK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00330907;
90% Identity: iTF_00330907;
80% Identity: iTF_00330907;