Caen039086.1
Basic Information
- Insect
- Chrysomela aeneicollis
- Gene Symbol
- -
- Assembly
- GCA_027562985.1
- Location
- JARUHR010000104.1:210037-213180[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0022 0.33 13.0 2.7 1 23 119 141 119 141 0.98 2 18 0.0001 0.016 17.1 0.6 1 23 146 168 146 168 0.99 3 18 3.1e-05 0.0048 18.8 0.3 1 23 174 196 174 196 0.98 4 18 0.0014 0.21 13.6 0.6 2 23 204 225 203 225 0.97 5 18 0.00066 0.1 14.6 1.6 3 23 233 253 231 253 0.97 6 18 1.1e-05 0.0017 20.1 0.6 2 23 260 282 259 282 0.96 7 18 0.00015 0.022 16.6 0.8 1 23 288 310 288 310 0.98 8 18 0.0016 0.25 13.4 3.1 1 21 316 336 316 337 0.95 9 18 0.0001 0.016 17.1 0.5 2 23 358 379 357 379 0.96 10 18 0.00037 0.057 15.4 0.5 1 23 385 407 385 407 0.98 11 18 0.033 5.1 9.2 0.5 2 23 414 436 413 436 0.96 12 18 2.1e-05 0.0033 19.3 1.8 1 23 458 480 458 480 0.98 13 18 1.8e-05 0.0027 19.5 0.4 1 23 498 520 498 520 0.99 14 18 3.8e-06 0.00059 21.6 0.5 1 23 526 548 526 548 0.98 15 18 0.00013 0.019 16.8 4.3 2 23 556 577 555 577 0.97 16 18 0.0013 0.2 13.7 1.0 1 20 583 602 583 603 0.96 17 18 0.0027 0.41 12.6 0.7 2 23 608 630 607 630 0.96 18 18 0.0017 0.25 13.3 1.9 1 20 636 655 636 657 0.95
Sequence Information
- Coding Sequence
- ATGCCCGAAAGAATATTGCACAAAAGACTCATTGATAAAGCACAACAAGATTTGACCGACCACAGACTTTATGGCCACGAAGTATCTGGGGATTTTGGTCTGATTGATAAAgatgaaatagaaataaaagAGGAAATTCAGGTAGAAGGTAAAGATCAAATTGAAATAAAGGAGGAAATTCAGGTAAGAGATGAAGATCGAATTGGAACAAAAGAGGACATTCAGGTAGAAGATGAAgataaaattaaaatgaaagagGAAATTCAAGTGGACGAGAAAGATATTACTATTTTTAATGTCCTGAGTTTCCAAGACAACAAAGAAGATAATGAAGTGCATAATGAGGATATATCATTCGAATGTGATACATGTCGTATGAAATTCGAGAACAAGGCTTGTTTGGATCAGCACATTAAATCTCATACTACCAAAAAATACGAATGCAGCGAATGTCTGATGAAATTTCCCTTCAAGTCGAAATTGATTATTCACCAAAGAATACATACCGGAGAAAAACCATTCGAATGTGGCATCTGTCAAAAGAGGTTCAGAATTAGAGGAGATGTGGTCAAGCACATGAGGGTACACAATGCAGGAGTGAAATCGGTCGAATGTTTCGTCTGTCAAAAAAAGTTTTACGATAATGGAATCCTGAAAAATCATTTGAGATCGCACACTGACGAGAAACCATATGGATGCGCTATTTGTCAAAAACAGTTTGCGCTAAAATGTTATTTAACCAAACACATCATGACCCACACCGACGATAAGCCCCTCCGCTGTAATATCTGTTTTAAGAAGTATGCTTATAAGAGTGAATTGAACAACCATCTGAGAGTAGCACACACTAAAGAAAAACCGTTCAAATGTGCAAGATGTCCGAAAGGATTCGGCTCTAAAGAGTTATTGAACAAGCACAATAAAATGCATTTAGAAAGGGGACCATTCGAATGTAGTATGTGTCAAAAGAAATATAAGTATCAGATTAGTTTGAAACAACACATATGTCAAAAGAAACCCAGATCTAAAGAAGAGTACATGAGGATGCAGAATAGAAGAGTAAAATCGGTCGAATGTTATCTCTGTCAAAGAAAGTTTTACGGTAACGGAGATCTGAATAAGCATATGAGATTGCACACTGGCGAGAAACCGTATAGATGTGCTATTTGTCAAGAAGGGTTTACGCGAAAAACAATTTTAACCAGACACACCATGATCCACACCGGCGATGAGCCGCTTAAATGTCAAATTTGTTTAAAAATATTTGCTTGTGAGAAGGAATTGGCCAACCATCTTAGAATAGCACACACTAGAATAAAACCGTTCAACTTATTGAACGAGCACAATGAAGTACATACAAAAAGGAAACCATTCGAATGTAATAGGTGTCCAAAGAAATTCAAGCTCCAGTTTAGTTTGAATCGACACATTGAGTCTCATAATTCAGAGTTGACTTTGGATCAACGTATCAAATTACGTACTCCGAAAAAATACGAATGCAGTGAATGTCCGATGAAATTTGCTTTTAGGTCAAAATTGATTCTACACCAAAGAATACATACCGGAGAAAAACCATTCGAATGTGGCATCTGTCAAAAGAAATCCAGATCTAAAGGAGATTTGGTCAAACACATGAGGATTCACAATGAAGTAGAAAAAAAGGTCGAATGTTATGTGTGTCACAAAAAGTTTTACGATAATGGGTGCCTGAAACAGCATATGAGATTGCACACTGGCGAGAAACCGTATAGGTGCGCTATTTGTAAAAAACAGTTTACGTTAAAAAAATATCTAACTACCCATACCGGCGATGAGCCGATCAAATGTGATCTttgttcaaaaatatttgcatgTAAGGGGCAATTGACCAACCATGTGAGAGTAGCACACACTGTGAAAAAACTGTTCAGATGTGCAAGATGTCCGAAAGGATTTTGCTCAAAATACTTATTGAACAATCATAAAGGATCTAGCCCTAGCTCGATGTGTTTGAAGAATGCACTACTTTCTCCCAATTTCGCCATGTCCATATCTTCCCTATTGAATGGTGTCTGTGACCAAAAAGTGCGTTTGATACGAAGCCTGTAA
- Protein Sequence
- MPERILHKRLIDKAQQDLTDHRLYGHEVSGDFGLIDKDEIEIKEEIQVEGKDQIEIKEEIQVRDEDRIGTKEDIQVEDEDKIKMKEEIQVDEKDITIFNVLSFQDNKEDNEVHNEDISFECDTCRMKFENKACLDQHIKSHTTKKYECSECLMKFPFKSKLIIHQRIHTGEKPFECGICQKRFRIRGDVVKHMRVHNAGVKSVECFVCQKKFYDNGILKNHLRSHTDEKPYGCAICQKQFALKCYLTKHIMTHTDDKPLRCNICFKKYAYKSELNNHLRVAHTKEKPFKCARCPKGFGSKELLNKHNKMHLERGPFECSMCQKKYKYQISLKQHICQKKPRSKEEYMRMQNRRVKSVECYLCQRKFYGNGDLNKHMRLHTGEKPYRCAICQEGFTRKTILTRHTMIHTGDEPLKCQICLKIFACEKELANHLRIAHTRIKPFNLLNEHNEVHTKRKPFECNRCPKKFKLQFSLNRHIESHNSELTLDQRIKLRTPKKYECSECPMKFAFRSKLILHQRIHTGEKPFECGICQKKSRSKGDLVKHMRIHNEVEKKVECYVCHKKFYDNGCLKQHMRLHTGEKPYRCAICKKQFTLKKYLTTHTGDEPIKCDLCSKIFACKGQLTNHVRVAHTVKKLFRCARCPKGFCSKYLLNNHKGSSPSSMCLKNALLSPNFAMSISSLLNGVCDQKVRLIRSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -