Caen037090.1
Basic Information
- Insect
- Chrysomela aeneicollis
- Gene Symbol
- -
- Assembly
- GCA_027562985.1
- Location
- JARUHR010000059.1:1155477-1171822[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.00072 0.11 14.5 0.2 2 23 45 66 44 66 0.97 2 23 0.12 18 7.5 1.6 1 23 101 123 101 123 0.89 3 23 0.00014 0.021 16.7 3.8 1 23 129 152 129 152 0.98 4 23 0.0004 0.061 15.3 2.2 1 23 164 187 164 187 0.95 5 23 0.0016 0.25 13.3 1.4 3 23 196 216 195 216 0.99 6 23 6.8e-06 0.001 20.8 2.3 1 23 222 244 222 244 0.96 7 23 6.9e-06 0.0011 20.8 1.4 1 23 250 272 250 272 0.99 8 23 0.014 2.2 10.4 0.8 1 20 478 497 478 500 0.80 9 23 2.5e-05 0.0038 19.1 3.1 1 23 506 529 506 529 0.98 10 23 0.00075 0.11 14.4 1.7 1 23 541 564 541 564 0.97 11 23 0.00014 0.021 16.7 0.6 3 23 573 593 571 593 0.97 12 23 1.2e-06 0.00019 23.2 0.4 1 23 599 621 599 621 0.98 13 23 3.6e-06 0.00055 21.7 0.4 1 23 627 649 627 649 0.99 14 23 0.0021 0.32 13.0 0.1 3 21 657 675 656 676 0.95 15 23 2.4 3.7e+02 3.4 0.3 2 23 753 774 752 774 0.83 16 23 0.14 22 7.2 5.8 1 23 780 802 780 802 0.99 17 23 0.0021 0.32 13.0 1.2 1 23 808 830 808 830 0.95 18 23 8.3e-05 0.013 17.4 4.9 1 23 836 859 836 859 0.98 19 23 0.032 4.9 9.3 1.3 1 23 871 894 871 894 0.91 20 23 0.0007 0.11 14.5 0.7 3 23 905 925 903 925 0.97 21 23 5.8e-07 8.8e-05 24.2 3.6 1 23 931 953 931 953 0.98 22 23 2.4e-06 0.00037 22.2 0.4 1 23 959 981 959 981 0.99 23 23 0.018 2.8 10.1 0.7 3 21 990 1008 988 1009 0.93
Sequence Information
- Coding Sequence
- ATGGCTGACAGTGAGTATCCTACGACTATATTCAAAACACGCAAGCTGAAGTCCAAGTCGAAACGCTCCAGGCCCAAATACAAACGGACCTCTGAGGAGCACCCGCCACCCCTCAAACTAGAACATCCGATACAGTGCGACGAATGCGAGCTGAGCTTCACGAACAATGTGGACTTTGCCCTCCACTCTAAAACCCACGACAAGGAAGGCAAATACAGCTGCCACCTGTGCATCAACTTCCGCAACGCCTCCAAGTACCAGATAGAGATGCACGTTAGGGCTCACGAAGGCACCACCAAGTACAAGTGCGAGATCTGCAACCAAGGCTTCACCATCAGCACGCACGCCATCGAACACAAGTACTTCCACACGGGCGAGAAGCCCTTCCAGTGCGAGATATGCGGCAAGCACTTCATGTACTCGTGGTTCCTCTCCAGACACAGAAAGACCACCCACTACGAGATACTGACCGGCAGCCCGCTGGTCAAGTACGACTGCAACGTGTGCAGCAAGCACTACGCCACCGCGTCCAGCTTGAGCAGGCACAAGCTCAGCAAGCACAAAAAGATCGACGGCTCGGTGCTGTGCGACATCTGCGGCAAGCGGCTCTCGAGCAAGGAGAAGCTCAAGTTCCACCTGAGGACGCACACCGGCTACAAGCCGCACGCGTGCCACATGTGCCCCAAGAGCTTCTCCAAGAAGGACCAGCTGGTCGAGCACGTCAGAGTGCACACTGGCGAGAAGCCCTACGTGTGCAAGTACTGCGGGCGGGGCTTCACCCAACGCACGCCCCTCAAGACGCACGAGAAGACACACCTCCGCGATGACTCCGCCCCCTGCCGGCTTTTGGGGGCGGGGCCAAGCTCATGCCCCGTGTGCGGTTCGCTGTCGCCGTGCGAGCACTTGGTGAAAATGGGTATGATGACGCCCTCCAGGGAGGAGCCGTCGTGCTGTGGGGTGTGTGGGGCTTTGGGGGCGTGTCCGCACGCCCACGGGGCGTTTCCGAGGGTGTGCTCGGTGGAGGGCGTGGCGTGCGGGGTTTGTGGCCAGGTGGGGGCGTGCGTGCATCTGCAGGGCTACTTACCCGTGGGGTTCCCTTATCCACCATTCGACCAGCCAGCGCCGAAACCGAAACGCGGCAAGAAGAAGAAACCCGCAACGGGCGGCGACCCCTCCGAATCGAAACAGTCGCGCCGGAAGAGCACCACCCCCAGGCGGATGCTGGTCAGCCATCCGCCGCCCATAAAGCTCGAAGAGCCCATCCACTGCGACAACTGCTCCGACTCCTACTACAACCACGTCGACTTCGCCTTCCACTCGATCAAGCACAGCGAGGACGGCAAGTACAGCTGCCACATTTGCAGCAACTACCGCAACGCCAAGAAGTACAGCATCGAGATGCACATCAGGGCGCACGAGGGCTCCACCAGGTACAAGTGCGAGGTGTGCGGCAAGGCATTCACCATCAGCACCTACGCGGCCGAGCACAAGTTCTTCCACAGCGGCGAGAAGCCGTTTCAGTGCGAGATTTGCGGCAAACACTTCATGTTTTCACGGCAACTCGCGTCCCACAGGCGCACCTCGCACTACGAGATCCTCACAGGCAGCCCGCTGGTCAAGTACGACTGCGACGTGTGCAAGAAGCACTACGAGTCGGCGTTCGGGCTGCGCCGACACAAGATGACCATCCACAACAACGTGGACCTGTCGGTGATCTGCGAGATATGCGGCAAGACCATCTCCACCAAGGAGAAGCTCAAGTTCCACATGCGCACCCACACAGGCGACAAGCCGTACCCGTGCGAGGTGTGCGGCAAAGCGTTCGCCAAGAAGCACCAGATGATCGAGCACATGAGGGTGCACACGGGCGAGAAGCCCTACGTGTGCCCGCACTGCGGTAGGGGCTTCTCGCAACGGACGCCGCTGGTGTTGCACGTGCGGACGCACACGGGGGAAAGGCCGAACATTTGCAGGATATGCGGCAACGGGTTCATCTCCAAGACCTCGCTGGAGGCGCACATGAAGAACTGCTTCGTGCCCTTTCCAGCGAAAATAAAAACCGAAGAACCAGATGAACCCGATTCGCCGTACAACCCGAAACCCCACTCGAAGAGGGGCAGGAAAAAGGGCAGCAAAAACAAGCCCAAAGACCACGGCGAGGCGAAGAAGAAGCAGCCAAAGTCGAGGCGCAAAAGCGACAGCCCCAAGAAAATAATCCTGGCACACCCGCCCCCCATGGAGCTGGAGGAGCCCATCCAGTGCGACGTCTGCAGCAACTCCTACACCAACAACGTGGACTTTGCCTTCCACTCGCTGAGCCACAGCGACGACGGCAAATACACCTGCCACCTGTGCAACTACCGCAACAGCTCCAAGTACCACGTGGAGATGCACGTGCGGACCCACGAGGGCACCACCAAGTACAAGTGTGAGATCTGCGACAAGGCATTCTCCATCAGCACCCACGCCATAGAGCACAAGAACTTCCACACGGGGGAGAAGCCCTTCCAGTGCGAGATATGCGGCAAGCACTTCATGTTCTCCTGGCATTTGTCCTCACACCGGAGGACCTCGCACTACGAGATCCTCACGGGCAAGCCGCTCATCAAGTTCGACTGCGTGGCGTGCAACAAGCACTACGAGTCGGCTAGCGGCCTCAGGAGGCACAACATCAAGAAGCACAAGTTCAACGAGATCGACCTCTCGGTCATCTGCGAGATATGCGGCAAGAAGCTCTCCAGCAAGGAGAAGCTCAAATTCCACCTGAGAACCCACACGGGGTACAAACCCCACTCGTGCCACGTGTGCCCCAAGAGCTTCTCCAAGAAGGATCAGCTCATCGAGCACATCCGCACCCACACGGGGGAGAAGCCCTACGTGTGTAAGATCTGCGGCAAAGGGTTCGCGCAGAGGACACCGCTGAAGACTCACGAGAGGACTCATAATGTGGACAGGCCTGGGACTGCCTGCACCATCTGCGGGTGCGTGTTTAGGCTGCGCTTCGAGTTCGAGAACCACGTGAAGAGCTGCTTTGCCACGCACGCCGCTCAGATTCAGATGCCCTTTCCGATGAATTATAAGATCGAGAGCGAGTTGCAATAG
- Protein Sequence
- MADSEYPTTIFKTRKLKSKSKRSRPKYKRTSEEHPPPLKLEHPIQCDECELSFTNNVDFALHSKTHDKEGKYSCHLCINFRNASKYQIEMHVRAHEGTTKYKCEICNQGFTISTHAIEHKYFHTGEKPFQCEICGKHFMYSWFLSRHRKTTHYEILTGSPLVKYDCNVCSKHYATASSLSRHKLSKHKKIDGSVLCDICGKRLSSKEKLKFHLRTHTGYKPHACHMCPKSFSKKDQLVEHVRVHTGEKPYVCKYCGRGFTQRTPLKTHEKTHLRDDSAPCRLLGAGPSSCPVCGSLSPCEHLVKMGMMTPSREEPSCCGVCGALGACPHAHGAFPRVCSVEGVACGVCGQVGACVHLQGYLPVGFPYPPFDQPAPKPKRGKKKKPATGGDPSESKQSRRKSTTPRRMLVSHPPPIKLEEPIHCDNCSDSYYNHVDFAFHSIKHSEDGKYSCHICSNYRNAKKYSIEMHIRAHEGSTRYKCEVCGKAFTISTYAAEHKFFHSGEKPFQCEICGKHFMFSRQLASHRRTSHYEILTGSPLVKYDCDVCKKHYESAFGLRRHKMTIHNNVDLSVICEICGKTISTKEKLKFHMRTHTGDKPYPCEVCGKAFAKKHQMIEHMRVHTGEKPYVCPHCGRGFSQRTPLVLHVRTHTGERPNICRICGNGFISKTSLEAHMKNCFVPFPAKIKTEEPDEPDSPYNPKPHSKRGRKKGSKNKPKDHGEAKKKQPKSRRKSDSPKKIILAHPPPMELEEPIQCDVCSNSYTNNVDFAFHSLSHSDDGKYTCHLCNYRNSSKYHVEMHVRTHEGTTKYKCEICDKAFSISTHAIEHKNFHTGEKPFQCEICGKHFMFSWHLSSHRRTSHYEILTGKPLIKFDCVACNKHYESASGLRRHNIKKHKFNEIDLSVICEICGKKLSSKEKLKFHLRTHTGYKPHSCHVCPKSFSKKDQLIEHIRTHTGEKPYVCKICGKGFAQRTPLKTHERTHNVDRPGTACTICGCVFRLRFEFENHVKSCFATHAAQIQMPFPMNYKIESELQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -