Caen010684.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chrysomela aeneicollis
Gene Symbol
Zfa
Assembly
GCA_027562985.1
Location
JARUHR010000007.1:14589885-14614485[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00073 0.11 14.4 0.9 3 23 143 163 141 163 0.96
2 16 0.0036 0.55 12.3 2.7 2 23 170 191 169 191 0.96
3 16 0.0045 0.68 12.0 0.8 1 23 198 220 198 220 0.92
4 16 0.00021 0.032 16.1 0.8 1 23 316 338 316 338 0.99
5 16 2.6e-06 0.00039 22.2 6.5 2 23 345 366 344 366 0.98
6 16 5.7e-05 0.0087 17.9 2.8 2 23 390 412 389 412 0.96
7 16 7.3e-05 0.011 17.6 2.6 3 23 494 514 492 514 0.96
8 16 0.00046 0.071 15.1 1.1 1 23 520 543 520 543 0.92
9 16 1.7e-06 0.00026 22.7 0.8 1 23 548 570 548 570 0.98
10 16 8.3e-06 0.0013 20.6 2.2 2 23 581 602 580 602 0.97
11 16 1.4e-07 2.1e-05 26.2 0.9 1 23 609 631 609 631 0.97
12 16 3e-05 0.0046 18.8 1.6 3 23 643 663 641 663 0.92
13 16 0.00073 0.11 14.5 5.2 1 23 669 691 669 691 0.99
14 16 4.2e-05 0.0064 18.3 1.7 1 23 697 719 697 719 0.96
15 16 7.6e-08 1.2e-05 27.0 0.2 1 23 725 747 725 747 0.99
16 16 6.3e-05 0.0096 17.8 0.2 1 23 753 777 753 777 0.94

Sequence Information

Coding Sequence
ATGATTGATAAAGAATTAGACGTTATGGTTGGCAAAATTTGCCGATCATGTATGTGTGAAGATGAAAATATGCATGATATGTTTGAGAACACTGAATCAACTACACTTCTCTCTGATATGATGGTAGCTTGTGCATCTATCCAGGTAACTTCAGGAGATGGGTTACCAAGTAATTTATGTCATGTTTGTAAGGATAAGCTTAAAAACgcatttgaattcagaaaacaATGTCAAAATTCGGATTCTACTTTGAGAGAGTTAGTACATATTGATAATAAGAAATCTGCAAAAAACGAGGAAAGTATTATAGTTCATCCTGATGTACATGATGATATGTatgatgatgaagatgatgttCCATTGTTGAAAAGAAACCTCAAAAGGAAACGTGGTAGACCCAAGAAAAAATCTCCAGATAATTTAGCTTGTACCTTTTGTAACAAAATCTTGCAGACAAAAAAAGGGTTGAGAGTTCATATGAGATCACACACTGGAGAAAAACTCAAATACTGTCTTTTTTGTGATGCAAAGTATACACGTACCAATCATCTGATTCGTCATATTAGTACCCATGATAAACCAGACCTGGAGCACCCTTGTGAGAGTTGTACCAAAACCTTTCAGACAGCAGCTGATCTCTATAGACATTCCATAGAACATGAAGAGGGAGTGGATAGTGAAATCAAAGTAGAAACTGAAGAAATCAAATCTGAGGAAACAGTAGAGTCTGAAATTTCTAGTCTTATGGTTAAGAACTTTGATTTACCTCATATTGAAGTATCACATGAAGATCAAGATGATATATTCAAGGAAAATTACCCTATGAGTGATGGTTTTGATGATCATGATGATAGTGATGAGGATTTTGCAGTAGAGGTGAAAGATGAAAAGAGAAATGAAATGAAGAATAGAAGAAACCGCCCAGAGAATAATGACAAAGCCTTGTATGAATGTAAAGAGTGTACCAAGGTGATGACTACTTATATTGGTTTGAAGATTCACATGAGGAAGCATACTGGAACTGGACTTTCAACTTGTAAAATCTGCAAGAAGGCATTTACGAAACATAGCCACTTGGTTAGACATATGCGTACGCATGGCACTGATGAGGTTGAAAAGTTAAAATCGCTAAGAAAACTGTCGGATGGTAAAGATAAAAAGGTCATGGAATGTGATTATTGTGATCGCAAATTTAAGTATAAAAAAAGTTTTGTCCACCACATGCAAGTGGAACATGGTATGTCGGATATGGATAGCGATTTCGAAGGTGTTAACGTCTCCGATAAAGACAAGGAAAAGGATGAGGATGCACTAGAAGGCCCAGATGCCCAGCACTATGGAGCTGAAGATACTTCTCAAAATTTGATCCCATCCGAGGAGAAGCCAATTTTGGACATACTCGCCGTGGAGGACGAGGAAGCCGGTATTCCTGACACGGAAAATGTGTTCATCAAAAAGGCCCGAGGGAAAAACCAGATATGCCACGTTTGCGGTGCTTCTTTCAACAGGGTTAATCACCTGACACGTCACATGACTCTGCACCGTTCCATACTCGTGCATCAGTGCGACAGGTGCGAGAAAGCGTTCGCCACTGAGGAACACCTCAAGCTTCATGTCGAGGAGGAACACATTAACAAACCTTACGTTTGTACAGTTTGTAATAAGCCATTCAGCAGAGGCGAGCATTTGATAAGGCATCTAAAGGTGCACCAAAACACCCAAGAGAAGGAGGCTAGTTTGAAGTGTTCTATTTGTGACTCGACGTTCACCAGATCGGACCACCTTGCCCGTCACACGAAAATCCATCTGCTGCAAGACAAACGTCACGTTTGTGGAGAATGTGGCAAGGCGTTCAATCGTCTGGACAACCTCAAAACCCACCAGAGGATCCACACCGGGGAAAAGGATAACGCAAAATTGCATTTGTGTATTTATTGTGGAAAGGAATTCAATAATTCCAGTAACATGattgTCCATATGAGAAGACATACTGGGGAACGACCTTATAAGTGTAGCGTATGCAATAAGGGTTTTCCGAGATCACATGACTTGAAATGTCATGAGCGTACTCACTCTGGAGAAAAACCTTATTTGTGTACATTGTGTGGGAAATCGTTTAATAAGAGCAACAAACTGCTGCGGCACAGCCGCGTGCACACCGGCGAGCGCCCCTACGTGTGCAACATCTGCGGGCGCGCGTTCACGCAGTCCAACGATCTGGCGCTGCACATGCGCAGGCACACCGGCGCAAGGCCGTACGTGTGCGGCGTGTGCCCGGCGCGCTTCATCCAGTCGGGCCAGCTGAAGACGCACCGCCGCACCACCGGCCACTGGATGGACACGCAGCCCGACCTCAAGGGCGGGCACCGAGTCGAGCCGGTCGTGCCGGCGCACGAGCCGCTGCCCATCAGGTTCAAGGTGCACAAAGCTTTGAAAATGGAAGAACCAACCACCAGCCAAGCACAATCACATCAATCCATCACAGACGGTTCGATGACTATGTCTGAAATTCACCCCATTCAAACTGAACCGCAGAGGATCCTCATGGGCATCATGGGAAACATCAAACTCTCCTCCGATCAACAACCTCTGCTCATCGATGGAACGAAATTGGCAGAACTTCACAACGCAGGTCTCGTCAACTTGCCATCGGTCATCCAAACAACGAATGGCGACGAAATCAAACTGAAATCAGAGGTGGGCAGTTTCACCATCGCCCATTGTGAAGACATGGATAAGCAGGAAGAGAACGCAGCATCCTCCTTCCAAGAGGGCGTTGTGATCTATTCCAGTGTCGGTCACACCCCGACCACCTACACGTCGAGcgaaaatttcaatttccaGAATTTCCATTGA
Protein Sequence
MIDKELDVMVGKICRSCMCEDENMHDMFENTESTTLLSDMMVACASIQVTSGDGLPSNLCHVCKDKLKNAFEFRKQCQNSDSTLRELVHIDNKKSAKNEESIIVHPDVHDDMYDDEDDVPLLKRNLKRKRGRPKKKSPDNLACTFCNKILQTKKGLRVHMRSHTGEKLKYCLFCDAKYTRTNHLIRHISTHDKPDLEHPCESCTKTFQTAADLYRHSIEHEEGVDSEIKVETEEIKSEETVESEISSLMVKNFDLPHIEVSHEDQDDIFKENYPMSDGFDDHDDSDEDFAVEVKDEKRNEMKNRRNRPENNDKALYECKECTKVMTTYIGLKIHMRKHTGTGLSTCKICKKAFTKHSHLVRHMRTHGTDEVEKLKSLRKLSDGKDKKVMECDYCDRKFKYKKSFVHHMQVEHGMSDMDSDFEGVNVSDKDKEKDEDALEGPDAQHYGAEDTSQNLIPSEEKPILDILAVEDEEAGIPDTENVFIKKARGKNQICHVCGASFNRVNHLTRHMTLHRSILVHQCDRCEKAFATEEHLKLHVEEEHINKPYVCTVCNKPFSRGEHLIRHLKVHQNTQEKEASLKCSICDSTFTRSDHLARHTKIHLLQDKRHVCGECGKAFNRLDNLKTHQRIHTGEKDNAKLHLCIYCGKEFNNSSNMIVHMRRHTGERPYKCSVCNKGFPRSHDLKCHERTHSGEKPYLCTLCGKSFNKSNKLLRHSRVHTGERPYVCNICGRAFTQSNDLALHMRRHTGARPYVCGVCPARFIQSGQLKTHRRTTGHWMDTQPDLKGGHRVEPVVPAHEPLPIRFKVHKALKMEEPTTSQAQSHQSITDGSMTMSEIHPIQTEPQRILMGIMGNIKLSSDQQPLLIDGTKLAELHNAGLVNLPSVIQTTNGDEIKLKSEVGSFTIAHCEDMDKQEENAASSFQEGVVIYSSVGHTPTTYTSSENFNFQNFH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00740206;
90% Identity
-
80% Identity
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