Caen018314.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chrysomela aeneicollis
Gene Symbol
-
Assembly
GCA_027562985.1
Location
JARUHR010000013.1:15565138-15567612[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.0003 0.046 15.7 0.1 2 23 13 34 13 34 0.98
2 20 2.5e-05 0.0038 19.0 2.6 1 23 40 63 40 63 0.96
3 20 2.8e-05 0.0043 18.9 0.4 1 23 69 91 69 91 0.98
4 20 2.8e-07 4.3e-05 25.2 1.5 2 23 99 120 98 120 0.97
5 20 5.8e-06 0.00089 21.0 0.2 1 23 126 148 126 148 0.98
6 20 0.0074 1.1 11.3 2.6 1 20 175 194 175 196 0.94
7 20 0.00012 0.018 16.9 3.2 1 23 216 238 216 238 0.99
8 20 3.7e-05 0.0056 18.5 1.9 1 23 244 266 244 266 0.98
9 20 4.4e-06 0.00067 21.4 0.5 1 23 277 299 277 299 0.98
10 20 2.6e-06 0.0004 22.1 3.8 1 23 306 328 306 328 0.98
11 20 3.2e-06 0.00048 21.9 3.2 1 23 334 356 334 356 0.98
12 20 9.9e-05 0.015 17.2 0.3 2 23 363 385 362 385 0.95
13 20 0.00026 0.039 15.9 3.5 1 23 391 413 391 413 0.97
14 20 0.0018 0.27 13.2 3.9 1 23 419 441 419 441 0.98
15 20 0.0013 0.2 13.6 5.8 1 23 509 531 509 531 0.98
16 20 0.013 1.9 10.5 1.1 1 21 536 556 536 557 0.96
17 20 0.00098 0.15 14.0 2.0 1 23 564 586 564 586 0.95
18 20 0.12 18 7.5 0.1 1 17 597 613 597 614 0.92
19 20 0.071 11 8.2 0.0 2 23 624 645 623 645 0.95
20 20 8.9e-05 0.014 17.3 2.1 1 23 691 713 691 713 0.98

Sequence Information

Coding Sequence
ATGGCCAAAGTTTACCACCAAGgcaacaagttgaatgaatgTAGTGAATGCCTGAAAGGTTTCGGTAGCAAAGGAGCATTGATAGTACATCGAAGAACGCATTCCGGGGAGAAACCATTCGAATGTTCTATGTGCTCGAAGAAATTCACTCGGTTAAATCAATTAACCAGACATACCGAAAAAATGCACCCGGGAGAGAAACTTTTCGAATGTGGCATCTGTCAAAAGGAATCCAGATCACAAAGAGGTTTAGAAAAGCACATGAAGGTGCACACTGGAGAAGAAAAGTCGGTCGAATGTTCTGTATGTCAAAAAAAGTTTGCGCGAAAAGGTAATTTAACCAAACACATGAAAAAACATACCGGCGATAAACCATTCGAATGTAATTTTTGTGGTAAAAAATTACCATATAGCAGTGAACTCGCGATTCACATGAGAGTACACTCTAAACTGATCAAATGTACTGAATGCCCTGAAAAACTATTGGCTGAAAACAATGAAGTGCATACAGAAGATATATCATTCGAGTGTAATATATGTCGTATGAAATTTAAGCACAAGGCCTGTTTGGATCAACATATCGATCGTTCTCAGGATCGCAAAGATTGTACGATGGCAAACATTCACCATCAAAGCAAGAAACAATACAAATGCTGCGAATGTCTGAAGAATTTTCGCACCAAGCCAGAATTGATCTCACACCGAAGAATACATACTGGAGAAAAACCGTTCGAATGTGTTACGTGCTCTAGGAAATTCTCTCAGTTATCTTCATTAACCAGACATAAACAAATTCACACGGGCAAAACGCACGGGGGAGAAAAACTATTCGAATGTGGGATCTGTCAAAAGAAATCCAGATCTAAAGGGGATTTGGTTAAGCACATGAGGGTGCACACTGGAGGAGAAAGACCATTCGAATGTTCTGTCTGTCAAAAAAAGTTTTATGATAATGGACATCTGAAGCAGCATATGAAATCGCACACTGACGAGAAACCGTATAGATGCGCTATCTGTCAAAAACGGTTTGCGCAAAAATGTAATTTAACCAGACACATCATGAACCACACCGGCGATAAGCCGCTCAACTGTAATCTTTGTGTAAAGAAGTTTGCTTATAGAAGTGAATTAACCAACCATGTAAGAATAGCACACACTAGAGAAAAACCGTTTAAATGTGCAAGATGTCCGAAAGGATTCTGCACAAAGGACCTATTGAACAAGCACAATAAACTACATACAAATAGGAAACCATTCAAATGTAATATGTGTCGAAAGAAATTCCTGCATCAGATTAGTTTGAATCGACACATAGAATCACATAATTCAGATTTGACCGTCCACCGACTTCATAAACAGGAAGTATCTGGGAATTGTGGTCCGATAGATACAgatcaaattgaaataaatgagatGATTCGGGTAGAAAATGAAGACCAAATTGAAATGAAAGAGGAAATGCAGGTAGATGAGAAATGTATTCctatttttgatgaaaacaaagAAGTGCATATTGAAGAATCATTCGAATGTGACACATGTCGCATAAAATTCAAGCACAAGGCTTATTTGCATCAACACATCAAATCACATAGTACCAAACAATATGAATGCAGCGAATGTATAAAGAAATTTCACTTTAGGTCAAAATTGATTGTACACCAAAGAATAAATACCGGAGAGAAGCCATTTGAATGTTCTATGTGTTTGAAGAAATTCACTGAGTTAGGCCATTTGAAAAGACATAATGAAATACACGCGCGAAAAATTCACCCGGTAGAGAAACTATTCGAATGTGGAATTTGTCAAAAGAAATCCAGATCTAAAGGAGATTTGGTGAGGGTGCACACTGGAGCAGAAAGATCAGTCGAATGTTCTGTCTGTCCAGAAAAGTTTTATGATAATGGAGGTCCGGAACAGCATATGAAATTGCACCCTGGCGAGGAACCGTATGAATGCACTATGAATGCATGTAAGAGTGGATTGAGCAACCATGTAAGAGAAGTACACACTGGAGAAAAAACATTAGAATGTGTTAGATATCCGAAAGCACATACAAAAAGTAAACCATTTGAATGTAATATGTGTCAAAAGAAATACAAGCTCCAGTTTAGTCTGAATCGTCACATTGAATCACATAATTCAGATTTTACCGACCACAGATTTTATAACCAGGAGATATCTGGGAATTGTGGTCTGATTGATACAGATCGAATTGTAATGAAGGAGGAAATGCATGTAGAAGATGaagatcaaatcgaaataaaagagGAAATTCAGGTAGACGAGAAAAATATTCCTAGTTTTGATGTCAGGAGTTCCCAAGACAAGAACGAAGACATTTTCGCACCATCAAAATTTCTTCTTGATATTGGTACCTCTCAAAGTGAATGCGATCTGAAATTTGATAATCATGAAACGTTCTACGACTTCAAAGAATTTCCTATAAAGGTAGAGGAAGAGGAAAATAATTAG
Protein Sequence
MAKVYHQGNKLNECSECLKGFGSKGALIVHRRTHSGEKPFECSMCSKKFTRLNQLTRHTEKMHPGEKLFECGICQKESRSQRGLEKHMKVHTGEEKSVECSVCQKKFARKGNLTKHMKKHTGDKPFECNFCGKKLPYSSELAIHMRVHSKLIKCTECPEKLLAENNEVHTEDISFECNICRMKFKHKACLDQHIDRSQDRKDCTMANIHHQSKKQYKCCECLKNFRTKPELISHRRIHTGEKPFECVTCSRKFSQLSSLTRHKQIHTGKTHGGEKLFECGICQKKSRSKGDLVKHMRVHTGGERPFECSVCQKKFYDNGHLKQHMKSHTDEKPYRCAICQKRFAQKCNLTRHIMNHTGDKPLNCNLCVKKFAYRSELTNHVRIAHTREKPFKCARCPKGFCTKDLLNKHNKLHTNRKPFKCNMCRKKFLHQISLNRHIESHNSDLTVHRLHKQEVSGNCGPIDTDQIEINEMIRVENEDQIEMKEEMQVDEKCIPIFDENKEVHIEESFECDTCRIKFKHKAYLHQHIKSHSTKQYECSECIKKFHFRSKLIVHQRINTGEKPFECSMCLKKFTELGHLKRHNEIHARKIHPVEKLFECGICQKKSRSKGDLVRVHTGAERSVECSVCPEKFYDNGGPEQHMKLHPGEEPYECTMNACKSGLSNHVREVHTGEKTLECVRYPKAHTKSKPFECNMCQKKYKLQFSLNRHIESHNSDFTDHRFYNQEISGNCGLIDTDRIVMKEEMHVEDEDQIEIKEEIQVDEKNIPSFDVRSSQDKNEDIFAPSKFLLDIGTSQSECDLKFDNHETFYDFKEFPIKVEEEENN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00330898;
90% Identity
iTF_00330898;
80% Identity
iTF_00330898;