Caen035805.1
Basic Information
- Insect
- Chrysomela aeneicollis
- Gene Symbol
- -
- Assembly
- GCA_027562985.1
- Location
- JARUHR010000052.1:1766550-1791704[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 8.4e-05 0.013 17.4 0.1 1 23 175 197 175 197 0.98 2 21 4.1e-05 0.0063 18.4 0.3 1 23 203 225 203 225 0.99 3 21 3.3e-05 0.005 18.7 3.1 1 23 231 253 231 253 0.98 4 21 0.00027 0.041 15.8 1.4 3 23 267 287 265 287 0.95 5 21 9.9e-05 0.015 17.2 0.2 2 23 294 315 293 315 0.97 6 21 2.4e-07 3.6e-05 25.4 1.4 1 23 321 343 321 343 0.99 7 21 2.2e-06 0.00033 22.4 0.3 1 23 349 371 349 371 0.99 8 21 1.6e-05 0.0024 19.7 0.5 1 23 377 399 377 399 0.98 9 21 0.25 39 6.4 0.1 1 16 405 420 405 422 0.85 10 21 1.8 2.8e+02 3.8 0.0 9 23 456 470 455 470 0.92 11 21 1.6e-05 0.0024 19.7 0.5 1 23 476 498 476 498 0.98 12 21 0.25 39 6.4 0.1 1 16 504 519 504 521 0.85 13 21 1.8 2.8e+02 3.8 0.0 9 23 555 569 554 569 0.92 14 21 1.6e-05 0.0024 19.7 0.5 1 23 575 597 575 597 0.98 15 21 0.25 39 6.4 0.1 1 16 603 618 603 620 0.85 16 21 0.33 50 6.1 0.0 7 23 629 645 629 645 0.96 17 21 1.6e-05 0.0024 19.7 0.5 1 23 651 673 651 673 0.98 18 21 7.6e-05 0.012 17.5 1.9 1 23 679 701 679 701 0.96 19 21 5.3e-06 0.00081 21.2 0.3 1 23 707 729 707 729 0.98 20 21 4.2e-06 0.00063 21.5 0.7 1 21 735 755 735 756 0.93 21 21 0.002 0.3 13.1 10.2 1 23 766 788 766 788 0.98
Sequence Information
- Coding Sequence
- ATGGACATGAGCTCATATTTGACAGCTCCTCTTGAGCTGGATAAGATTTGTAGGGCATGTTTGACGCAAAAAGGAGATATGAGACCTTTGTTTGGAGCTTGTTTAGATGAAATGTTGAATTCATTTGCTGGAATAGAGGTTTCAGAAGGAGATGGTTTTCCAAGCCTCATGTGTGTCCAATGTGTACTTCAATGTAGCAGGGCATATACATTCAAACAGCTATGTGAAAAATCTGATAATATTTTGCATCAGTATCTCACTCCAGAATTTCAGCAACAACTTGCCCAATCGATAGCAGACCAACAGCAAATGCAAGCGAAGCAAGAGCTACAAGAACAATTACAATTTGCAGATCAAATTAGTGGAGTGGTCATCAAACAGGACCTAGCAGAGTTTGTGACATATAATGAAATTGACCAGAATGAAGTGAAGGAAACATTTTACACATTAGAGAATGAAAATGTTGAGGAAGTTATCCTGGAAGGATTTGATACTACACAAATAGAAAATCCCAAACTGAAGTATGCTTGTACAAAATGTGAGGAAGCATTTGCTCTGAAGGTTGACCTGAAAGTCCACATGATGTCTCATCCAAAAGACCTCGACTACAAATGCGAGGTCTGCAACAAAGCATTTTCAGAAGCCCGCATCCTGAAACGCCACATCAAAATCCATTTGCAGCAAAAACCCCACCAGTGCGACCAATGCGACATGTCATTCGCGGAGAGTTCCAATCTCAGCAAGCACAAGAAGAAACACACGGGGGAGTTGAGGAACATCAAAGGGAAGCCTCATTTGTGTTCTGTCTGCGGCAGGGCCTTCAAGTGGGCTTCTAGTCTATCGAAGCACATGAAGTACCACACGGGCCACAAGTTGTTATCATGTGAATATTGCGGGAAGCAGTATGTTgagGCTCGAAGTTTGAGGATCCACGTCAGATCACATACTGGAGAACGCCCATATGTCTGTGATGTGTGCAATAAAGGCTTTACACAAGAGTGCAATTTGGAGAAACATATGCGGGTACACACAGGCGAAAAACCATTCGAGTGTCCAATTTGCCAGAAGAGGTTCACGCAGTCTGGCTACGTGGGCATCCACATGCGCACGCACACCGGCGCGCGGCCGTACGTCTGCCAGACGTGCGGCAAGGCCTTTGCCGGCTCGAGCACGCTCAACATCCACCGGCACGTGCACACCGGCGAGCGGCCGCACGCGTGCGCCGCGTGCGGCAAGGCGTTCAGCCGGCACGAGTTGCTCTCATACACACGTGCTCACACACTGGCGAGCGGCCGCATGTGTGCGCCGCCGCGGCAAGGTGTTCAGCCGGCACGAATCGCTCGTCATACACGCATACTGATCTATGCGTTCACGCAGTCTGGCTACGTGGGCATCCACATGCGCACGCACACCGGCGCGCGGCCGTACGTCTGCCAGACGTGCGGCAAGGCCTTTGCCGGCTCGAGCACGCTCAACATCCACCGGCACGTGCACACCGGCGAGCGGCCGCACGCGTGCGCCGCGTGCGGCAAGGCGTTCAGCCGGCACGAGTTGCTCTCATACACACGTGCTCACACACTGGCGAGCGGCCGCATGTGTGCGCCGCCGCGGCAAGGTGTTCAGCCGGCACGAATCGCTCGTCATACACGCATACTGATCTATGCGTTCACGCAGTCTGGCTACGTGGGCATCCACATGCGCACGCACACCGGCGCGCGGCCGTACGTCTGCCAGACGTGCGGCAAGGCCTTTGCCGGCTCGAGCACGCTCAACATCCACCGGCACGTGCACACCGGCGAGCGGCCGCACGCGTGCGCCGCGTGCGGCAAGGCGTTCAGCCGGCACGAGTTGCTCTCATACACACGTGCTCACACACTGGCGAGCGGACGCATGTTCACGCAGTCTGGCTACGTGGGCATCCACATGCGCACGCACACCGGCGCGCGGCCGTACGTCTGCCAGACGTGCGGCAAGGCTTTTGCCGGCTCGAGCACGCTCAACATCCACCGGCACGTGCACACCGGCGAGCGGCCGCACGCGTGCACCGCGTGCGGCAAGGCGTTCAGCCGGCACGAGTCGCTCGTCATACACACGCGCTCGCACACCGGCGAGCGGCCGCACGTGTGCGCCGTCTGCGACAAGGGGTTCTCGTCGTCTGGGCTGCTTTCGGGCCACATGCGCACGCACACAGGCGAGAAGCCGCACGCGTGCGACTCGTGCGGCAAGAGATTCTCAAGTTCCAGCAGTTTGAAGGTACACATGATGCGGTCCGAGGGTGTAaatggagaaaaaaattacatgtgCAAGGTGTGCCACAAATGTTTTGCAACATCATGCTCATTGCATTTACACCTGAATACGCATGCGGTCGAGGCAAAATCGAACGACATTGAATTAGAAACAGTGCAAGTAACCGAATTGATGTAA
- Protein Sequence
- MDMSSYLTAPLELDKICRACLTQKGDMRPLFGACLDEMLNSFAGIEVSEGDGFPSLMCVQCVLQCSRAYTFKQLCEKSDNILHQYLTPEFQQQLAQSIADQQQMQAKQELQEQLQFADQISGVVIKQDLAEFVTYNEIDQNEVKETFYTLENENVEEVILEGFDTTQIENPKLKYACTKCEEAFALKVDLKVHMMSHPKDLDYKCEVCNKAFSEARILKRHIKIHLQQKPHQCDQCDMSFAESSNLSKHKKKHTGELRNIKGKPHLCSVCGRAFKWASSLSKHMKYHTGHKLLSCEYCGKQYVEARSLRIHVRSHTGERPYVCDVCNKGFTQECNLEKHMRVHTGEKPFECPICQKRFTQSGYVGIHMRTHTGARPYVCQTCGKAFAGSSTLNIHRHVHTGERPHACAACGKAFSRHELLSYTRAHTLASGRMCAPPRQGVQPARIARHTRILIYAFTQSGYVGIHMRTHTGARPYVCQTCGKAFAGSSTLNIHRHVHTGERPHACAACGKAFSRHELLSYTRAHTLASGRMCAPPRQGVQPARIARHTRILIYAFTQSGYVGIHMRTHTGARPYVCQTCGKAFAGSSTLNIHRHVHTGERPHACAACGKAFSRHELLSYTRAHTLASGRMFTQSGYVGIHMRTHTGARPYVCQTCGKAFAGSSTLNIHRHVHTGERPHACTACGKAFSRHESLVIHTRSHTGERPHVCAVCDKGFSSSGLLSGHMRTHTGEKPHACDSCGKRFSSSSSLKVHMMRSEGVNGEKNYMCKVCHKCFATSCSLHLHLNTHAVEAKSNDIELETVQVTELM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -