Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.12 5.1e+02 2.3 0.3 16 29 59 72 51 80 0.79

2 7 1.6e-05 0.068 14.7 2.6 19 39 133 150 126 154 0.89

3 7 0.14 6.1e+02 2.0 0.5 18 33 160 177 156 186 0.74

4 7 0.0045 19 6.8 1.5 18 41 188 208 182 210 0.87

5 7 0.4 1.7e+03 0.6 0.4 18 29 216 227 210 238 0.77

6 7 0.00099 4.3 8.9 0.1 19 39 245 262 241 270 0.90

7 7 7.5e-05 0.33 12.5 3.5 15 36 269 291 261 293 0.76

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.12	5.1e+02	2.3	0.3	16	29	59	72	51	80	0.79
2	7	1.6e-05	0.068	14.7	2.6	19	39	133	150	126	154	0.89
3	7	0.14	6.1e+02	2.0	0.5	18	33	160	177	156	186	0.74
4	7	0.0045	19	6.8	1.5	18	41	188	208	182	210	0.87
5	7	0.4	1.7e+03	0.6	0.4	18	29	216	227	210	238	0.77
6	7	0.00099	4.3	8.9	0.1	19	39	245	262	241	270	0.90
7	7	7.5e-05	0.33	12.5	3.5	15	36	269	291	261	293	0.76

Coding Sequence: ATGATTGTAGTGAAAGAACAAGTTTCACAAgacaatgatgatgataattttgataatgaaGACTATTACAATGATGTGAAGATTGAATGTGAGAAAGATTACTATTTTAAACAAGGGCTGAAGGAGGAAATTGTAACAGAGCCAGACATCCAAGTGGATTTAACCACAGATGTCTCAAATTGTTGTCAAAATTGTGGtgaaactttttcatcaaaggAGTCCCTGCTTGAACACCATAATGAAATAATACCATGCAGACCAGAGGATTTTGGAGTTGCTCAAGCCTATATAGATTACCTAGAGAAGAGCAAAGGTAGGAGGAAAAAGGAAATAACAGATGACATTGAGCCAGATTATGTTAATGGACGAAAATTGAAAGGGAAAAGGCAGTTTCTGTGCAACCATTGTGGAAAAAATTATACTAGAAAAAATGGTTTGGAGCGTCACATGTTGACACATTCAGGCTTGAAACCATTTCAATGCAGAGAATGTGGCAAAGCTTTCATCACCAAAGACATACTCAAAACCCATATGCTCACTCATTTGGGTATCAAAGAGTATAAGTGCCAGGTATGCCAAAAACAATTCACTCAGTCCAGTCACCTGGGTTACCACATGCGCAGGCATTCAGGTGAGAAACCTCACACCTGCTCTTTTTGCTCCAAGGCATTCCTCTCCAGCTATCACCTGGAGCGTCACAAACTGATGCACACCGGCATCAAACCCTACagTTGCGAGCAGTGCGGCAAGCAGTTCGTCAGGAGCACCACGCTGCGCGACCACCTGCTCATCCACTCCGGGGAGAAGCCCTTCCAGTGCCAGCACTGCGGCAAGCAGTTCAACCGCAAGCAGTCGCTGACCAACCACATGTCGATACACGGCGGTGGCGGCGCCGACGCCAGAACCGGCGGCAGGCCGACGCCTCCCGTCGGTCAAAAGCGGGCGGAGGTTGGCTGCAAGGCGGAGCCTCTGGAAGAGGCTAAACTGTGCGAGGGCGCGGCCACGTGA
Protein Sequence: MIVVKEQVSQDNDDDNFDNEDYYNDVKIECEKDYYFKQGLKEEIVTEPDIQVDLTTDVSNCCQNCGETFSSKESLLEHHNEIIPCRPEDFGVAQAYIDYLEKSKGRRKKEITDDIEPDYVNGRKLKGKRQFLCNHCGKNYTRKNGLERHMLTHSGLKPFQCRECGKAFITKDILKTHMLTHLGIKEYKCQVCQKQFTQSSHLGYHMRRHSGEKPHTCSFCSKAFLSSYHLERHKLMHTGIKPYSCEQCGKQFVRSTTLRDHLLIHSGEKPFQCQHCGKQFNRKQSLTNHMSIHGGGGADARTGGRPTPPVGQKRAEVGCKAEPLEEAKLCEGAAT

Sequence clustering based on sequence similarity using MMseqs2