Caen006024.1
Basic Information
- Insect
- Chrysomela aeneicollis
- Gene Symbol
- -
- Assembly
- GCA_027562985.1
- Location
- JARUHR010000004.1:11963610-11964875[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00056 2.4 9.7 0.8 12 34 3 25 1 31 0.81 2 12 0.14 6.2e+02 2.0 1.0 14 29 33 48 26 58 0.69 3 12 0.0062 27 6.4 4.8 4 40 52 84 49 92 0.90 4 12 0.01 45 5.6 3.7 14 40 89 112 84 115 0.75 5 12 0.4 1.7e+03 0.6 0.2 17 27 120 130 114 133 0.81 6 12 1.1e-05 0.049 15.1 5.1 3 40 135 172 133 176 0.86 7 12 0.039 1.7e+02 3.8 4.3 14 40 173 196 168 200 0.80 8 12 0.067 2.9e+02 3.1 3.0 13 39 200 223 194 227 0.82 9 12 1.8e-05 0.079 14.5 5.2 6 40 222 252 218 259 0.83 10 12 0.087 3.8e+02 2.7 1.3 14 28 257 271 252 282 0.80 11 12 0.11 4.6e+02 2.4 1.0 13 26 284 297 273 308 0.78 12 12 0.0011 4.9 8.7 3.5 13 38 312 338 301 338 0.81
Sequence Information
- Coding Sequence
- ATGCAAACTACAAAGAAATCTATCGAATGCGACTTTTGTCAGAAGACATTCACTCACAAGCGTAGTCTTACCGGACACATCAGATTGCACACTGGAGAAACTCCTTTCGAATGTGATGTTTGCCAGAAGAAATTCACCATGAAGATCTACTTGAAAAAACACTTGAGTACCCATTCACGCGAAAGTATTTTTGAATGTCATATTTGCCAGACAAAATTCAAAGATAAAAGCTCTATGATGAGACACATCAAATTGCACACTAGCGAAAAACTTCACGAATGTGATATTTGTCAGAAGAAATTCACTCACAAGTATAATTTGACCTCCCACATTAGAATGCACACTGGAGAAACTCCTTTCGAATGTGATGTTTGCCAAAAGAAGTTCACCATGAAGATCTACTTGAAAAAACACCTGAGAATCCATTCAGACGAAAGTCTGTTTGAATGTAATATTTGTaagaaaaaattcaaagataAAAGCTCTATGATGAGACACATCAAAGTGCATGCTAACGAAAAACATCACGAATGTGACATTTGCCAGAAGAAATTCACTCACAAGTATAATCTGACCGCCCACATTAGAATGCACACTAGAGAGTCTCCTTTCGAATGTAATGTTTGCCTGAATAAATTCACTTCAAAATACAATTTAAACAGACACTTGAGTATCCATTCAGGCGAAAATCTTTTTGAATGTGATATTTGCCACAAACAAATCAAAGATAAAAGCAATATGATGAGACACATCAAAGTACACAATAGCGAAAAACATTACGAATGCGACATTTGCCAGAAGAAATTCACTTTAGAAAACGATTTCACCAGACACCGGAGAATCCATACTGGCGAAACTCCTTTCAAATGTGACATTTGTCAGAAGAAATTTATGTTTAAGTGGTACATGATGCAACACATTAAATTACACAACGAGGAGAAAGCTTTCGAATGTGATATTTGCCATAAAAAATTCACCTTGAAAAACTATTTGACCAAACACATGAAAACACATAGTGGCGAAGAATCTCCCAAATATCTGCATAGTCCTGATATAACTACTATGACAGGGGATCATTTCGATAATGAACAATCTGAAATGCAATTGGGAATCGATTTAGACGATAAGTTGGaagtgaaagtgaaattggAAGATCTACAGGATGCTTATTCTTCTGATGTTTCCGTAAAAAGTGAATGTGATGAATATCAATCAGAAATCAAGTTAGAAGGGTGCATCAAAATTGAGGAAAAAGGTACCTCTTGA
- Protein Sequence
- MQTTKKSIECDFCQKTFTHKRSLTGHIRLHTGETPFECDVCQKKFTMKIYLKKHLSTHSRESIFECHICQTKFKDKSSMMRHIKLHTSEKLHECDICQKKFTHKYNLTSHIRMHTGETPFECDVCQKKFTMKIYLKKHLRIHSDESLFECNICKKKFKDKSSMMRHIKVHANEKHHECDICQKKFTHKYNLTAHIRMHTRESPFECNVCLNKFTSKYNLNRHLSIHSGENLFECDICHKQIKDKSNMMRHIKVHNSEKHYECDICQKKFTLENDFTRHRRIHTGETPFKCDICQKKFMFKWYMMQHIKLHNEEKAFECDICHKKFTLKNYLTKHMKTHSGEESPKYLHSPDITTMTGDHFDNEQSEMQLGIDLDDKLEVKVKLEDLQDAYSSDVSVKSECDEYQSEIKLEGCIKIEEKGTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00330906;
- 90% Identity
- iTF_00330906;
- 80% Identity
- iTF_00330906;