Caen020855.1
Basic Information
- Insect
- Chrysomela aeneicollis
- Gene Symbol
- -
- Assembly
- GCA_027562985.1
- Location
- JARUHR010000017.1:9881715-9882374[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.1e-08 5.6e-06 27.4 0.0 1 34 18 50 18 59 0.91
Sequence Information
- Coding Sequence
- ATGGTGAGAAACTACCAAAGAACACCCGGGGCGAAGCCCTACCAAGACTATTCAGAAGATAATATGAAAAAAGCCATACAAGCTGTTGGGGAGGGGATGTCGAAGAAATTAGCTGCGGAAACGTATCAGGTACCTCGGACAACTTTGGGTAGTAAGATTCTTGGCAAAAATTCTGCAGCAGTAGGCCGTTCAAAAGTCCTTTCACCCGAGGAAGAACGCAGTATATCTGAGACCCTTGGAGTAGTGGATAATTGGGGTTTTCCGCTAACCAGGCTTGATGTGAGGACGGTCATCGCAAAATACCTAGACAAACAGGGAAAAACAGTGAGGatcttcaaaaacaacactCCAGGAGAAGATTTTCTTGATTCATTCATCCAGAGGAACAGGCTGTCCATTCGCCTGGCATCGAAGATAAAAAGGTCCAGATCATCCGTCGACCGTGAagacattttgaattttttcaccaATAATAATGAAGCTCTGAACAATGCAGATGATTTCAATATCTACAATTACGACGAGACAAATGTCACATATGATCCTGGGGCAAAAAAGGTGGTGGTCCCCAAAAACACGGAAAGGGTTGAAGACAGAACCACTCTCGCACCTCTATTAGATTATGGAAAGCCATATCTGAGAGTGTCGGCCAAAATTTGA
- Protein Sequence
- MVRNYQRTPGAKPYQDYSEDNMKKAIQAVGEGMSKKLAAETYQVPRTTLGSKILGKNSAAVGRSKVLSPEEERSISETLGVVDNWGFPLTRLDVRTVIAKYLDKQGKTVRIFKNNTPGEDFLDSFIQRNRLSIRLASKIKRSRSSVDREDILNFFTNNNEALNNADDFNIYNYDETNVTYDPGAKKVVVPKNTERVEDRTTLAPLLDYGKPYLRVSAKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01243364; iTF_00646853; iTF_00646799; iTF_00646784; iTF_01242885; iTF_01243322; iTF_01243391; iTF_01105736; iTF_01105836; iTF_01105742; iTF_00330544;
- 90% Identity
- -
- 80% Identity
- -