Caen015096.1
Basic Information
- Insect
- Chrysomela aeneicollis
- Gene Symbol
- -
- Assembly
- GCA_027562985.1
- Location
- JARUHR010000010.1:13004858-13006606[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.4e-09 4.7e-06 27.7 0.0 2 35 13 47 12 55 0.91
Sequence Information
- Coding Sequence
- atgtcTGAATCAACAAAACCAAGACAGAGTTGGAACGAAAATGATATGGCAGAAGCTATAGAGAATATTCGTCGTGGAAATATGGGATGGTATCTAGCATCAAAGACGTTCAACGTCCCGGCGACCACTCTGAGAAGACGGGCATATTTCACTGCATTGGCTGCCGTTCTCGACAAATATAAATTCTCTcctgaaaatatattcaatgttGATGAATCTGGCCTATCTACTGTCCAATCaagacctcaaaaaatcatagCAACTAAAGGTCGTAAACAAGTAGGTTCCATAAGTAGCGCCGAAAGAGGGCAAAGTTATACTGTTGTCTGCTGTATGAATCCATTGGGTAGATTCATACCACCAGCTTTGATATTTCCGAGGAAAAAATTCAAAGCTGAACTCATGGACAATGCATTTGCCGGAAGCATCGGGTACTGCCAAGAGAATGGGTGTATGTTCGGAGACATTTTCTTAAAATGGCTCAAACACTTTGCTTATCACGTGAAGCCTACTGAAGACAATAAAGTTTTACTACTGCTAGATGGACACAGTAGCCATAAAGGCTTGGAGGTATTAGAGTTCGCAAAATCCAATGGAATAGTCTTATTCTGTTTCCCGGCTCATTGCAGTCATCGAGTCCAACCTTTAGACGTAGGATTCTTTGGCCCCTTGCAAATTTATTATGACCAAGAAGTTCAAAATTGGATGAGAAATCATCCAGGTCGTTCCATTACTCATTTTCAAGTAGCAGAAATACTTAGGAATGCCTATATGAAGGCTTCAACACCGTCGAATGCAGTGAATGCGTTCAAAAAAGCGGgcatttatccattcaacccagATGTGTTCGAGGACAGGATGTTTACTCCATCTCAAATAACTGCTAACAAGGAGAACATTTCCATCACGTCCGAACAGATTACATCAGAACAACATTCACAAAATTATTGTGATAAAGAGCCTTGTGACAAATATCAAGAGGTACCTCACTCTAGCAAAGAGAAAAACTATGCTGGTGATCTAGGTGAGACACTAGAGATTAGCATAACAGATATTTTGCCTATTCCACAGGCTCCTCCAAAGAAAAAAAGTAAGAGAAGGCGAGGAAAAACTGGACACATAAATTCTACCCCTGAAATAAACATAATGAAAGAAGAAATTGCAGTGAAACAACAGAAGGAGCGAGAGAAGTTAGCTAGGGCGGTGAAAAGAAAACTCCCAGTTATCATAGAATCAGAAGATGAAGCATATGGAAACGATAGCGATAACTCTGACGCCGCTTGCTTATATTGCAATgaattatattccatgtgtcaGTCAGGAGAGTTCTGGATAAGATGTCAAAATTGTTGTAGTTGGTGCCATACCGAATGTGCAGGAATCGACAAGCACACGAAAAACTTCATTTGTGAACTTTGCACTAATTAG
- Protein Sequence
- MSESTKPRQSWNENDMAEAIENIRRGNMGWYLASKTFNVPATTLRRRAYFTALAAVLDKYKFSPENIFNVDESGLSTVQSRPQKIIATKGRKQVGSISSAERGQSYTVVCCMNPLGRFIPPALIFPRKKFKAELMDNAFAGSIGYCQENGCMFGDIFLKWLKHFAYHVKPTEDNKVLLLLDGHSSHKGLEVLEFAKSNGIVLFCFPAHCSHRVQPLDVGFFGPLQIYYDQEVQNWMRNHPGRSITHFQVAEILRNAYMKASTPSNAVNAFKKAGIYPFNPDVFEDRMFTPSQITANKENISITSEQITSEQHSQNYCDKEPCDKYQEVPHSSKEKNYAGDLGETLEISITDILPIPQAPPKKKSKRRRGKTGHINSTPEINIMKEEIAVKQQKEREKLARAVKRKLPVIIESEDEAYGNDSDNSDAACLYCNELYSMCQSGEFWIRCQNCCSWCHTECAGIDKHTKNFICELCTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00330508;
- 90% Identity
- -
- 80% Identity
- -