Caen018046.1
Basic Information
- Insect
- Chrysomela aeneicollis
- Gene Symbol
- retn
- Assembly
- GCA_027562985.1
- Location
- JARUHR010000013.1:10794561-10812539[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9e-22 9.3e-18 65.9 0.0 3 89 18 102 16 102 0.93 2 2 2.7 2.8e+04 -2.9 0.1 8 34 138 159 133 168 0.51
Sequence Information
- Coding Sequence
- ATGAAGTCTGTGAACCAATGGGAAACCATCCatatagtaggggagcccaacaGGAGATTCTGGGATTTACTCGAGCGTGGCAGATTAAGGCAAGGTACTCCAATAAACAGACTTCCAATAATGGCAAAATCGGTCCTGGATTTGTACGAACTATACAACTTGGTGATAGCTAGAGGTGGCTTAGTAGACGTTATTAACAAGAAATTATGGCAGGAAATCATCAAAGGCCTTCATCTTCCATCCTCAATAACTTCTGCAGCATTTACACTTAGAACACAATACATGAAGTACCTGTACCCGTACGAGTGCGAGAAACGCCGCCTGAGCACTCCCGCCGAGCTGCAAGCGGCCATCGATGGCAACAGGCGCGAGGGCAGGCGCAGCAGCTACGGCCAGTACGATGCTATGCAGcaacaccaccaccaccacgcGCAGCAGCAGCAGCGCAGCCCGGGCGGCCACCACGTGCAGATGTCGCCGCTGACGCTGGTCgcgcagcagcagcagcagctgGCCGCGCGCATGATGGGCGGCGGGCTGGGCGTGCAGGGGCTGCACAATGCGGGGGTGCACCACCCCAGCCACCCGCAGCCGCTCGGGCAGCCGATCAACGGGGGGCCATTGCCAGGCCTGGCGCCCAGCGAGTTCGAGGCGCGCATGATGGAGTACGTCAAGCTGCTGAACAAGGAGATCCGCAACAGCGCCACCGCCGCCACCCCCCCACACCCGAGCAGCGAGCCCACGCCCCCACCCCCGCAGCACGCCGCCGCCGTCCCACCGCTCGACCCTTTGGAGGTGTCGCGCATGACGCTGTGGAGCCTGTACAACAACAACCGGCCGCCGCCCGAGCCGCAGAAGGAGCCCATCAACCTGTCGGAGCCGGGCGGGCAGTCGCCGGTCGGGCAGTCGTTGCCAGGCGCGGCCGCCCTCGATCGCCGGTTCGCGGTAGCGGGCGGGCAGGTAAAAAGGGAGCGCGAGGCGCGCGGATCGCCGCCGCCCGCTAAGCGGCTGCCCAACAGGGCGGACGAGGAGGAGGAGGGGGATGAGGAGGAGGGGGAGGAGGAGGAAGAGGAGGAGGAGGAAGGGCAGGGGAGGGAGGTGAAGGTGTTGTCGCCCTCTACGAACATCAAGATCAACACTAGAGgcgaTTCCCGCAATGGTGACAACTCCCTAGTGGTGAGCATGGAACTCAACGGGATCACCTATCAGGGCGTCCTTTTTGCCCAGAACGATCCTCCCAATGGACGGACGGCGCTGACGTCCTAA
- Protein Sequence
- MKSVNQWETIHIVGEPNRRFWDLLERGRLRQGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKRRLSTPAELQAAIDGNRREGRRSSYGQYDAMQQHHHHHAQQQQRSPGGHHVQMSPLTLVAQQQQQLAARMMGGGLGVQGLHNAGVHHPSHPQPLGQPINGGPLPGLAPSEFEARMMEYVKLLNKEIRNSATAATPPHPSSEPTPPPPQHAAAVPPLDPLEVSRMTLWSLYNNNRPPPEPQKEPINLSEPGGQSPVGQSLPGAAALDRRFAVAGGQVKREREARGSPPPAKRLPNRADEEEEGDEEEGEEEEEEEEEGQGREVKVLSPSTNIKINTRGDSRNGDNSLVVSMELNGITYQGVLFAQNDPPNGRTALTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -