Chae030997.1
Basic Information
- Insect
- Chrysolina haemoptera
- Gene Symbol
- stc
- Assembly
- GCA_958298965.1
- Location
- OY282592.1:28927676-28934804[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2 6.2e+04 -4.8 3.4 6 10 409 413 406 413 0.69 2 12 2.9e-06 0.09 14.5 12.6 3 19 453 469 449 469 0.94 3 12 1.4e-08 0.00042 22.0 14.8 1 18 505 522 505 523 0.97 4 12 5.2e-10 1.6e-05 26.5 13.6 1 18 563 580 563 581 0.97 5 12 6.8e-08 0.0021 19.8 14.4 4 19 628 643 621 643 0.87 6 12 1.4 4.3e+04 -3.6 2.0 5 10 672 677 672 677 0.93 7 12 0.86 2.7e+04 -2.9 10.8 1 11 683 693 683 705 0.89 8 12 1e-09 3.2e-05 25.6 12.8 1 18 710 727 710 728 0.98 9 12 0.97 3e+04 -3.1 0.8 6 10 757 761 756 761 0.86 10 12 0.0025 76 5.2 14.7 1 19 767 784 767 784 0.93 11 12 3e-08 0.00092 20.9 19.2 1 19 820 839 820 842 0.96 12 12 0.18 5.5e+03 -0.7 18.3 1 18 849 867 849 868 0.92
Sequence Information
- Coding Sequence
- ATGTCTACCCAGAACAGTGAAGAAAAGACGTTTCCAATTCAGTCCCAAGCTTACTTTGGAAATCATTCTCAAAATTTAAATGTTAATTTGTCAGATTTGCAACCTACTGCTCAAGAATTCTATCCTACAAGTGCTGGTTCCCACAATGGAGCAGTTAAAAAGAAACCTCAACAATATTACAACAAGAATAGGGTTAGGGACAATGGAAGAGGAAGATACCAGTATGGCACTGGTAGAACTTTCAATGGCTTCAAAAATGATTATGGTACAAACCATGTAAATGATAATTTGGATATAACAGAGAAATATGGCAGTAGTAGCAGCAGCcaaaatctagaaaaaatgaGCAACAGCAGGCGTAATCCAGAGTTATCTGATGATAaagtttttgttaaaaattaccaTCAACCTTTTAGCAAACATGTTCTTGCTGCAGGTAGTGGTTATGATAAAAGGAATTTTGAAGATCCTAATTCTCTCCAGAATAGATATGGAGATGGTGAGAACATACCCAGTTCTGGCTCTGCACGCTCATTTAGGGGATATGggggaaattttgaaaaatcaaaaagaaaCTATCCTAAGAATTCTGAGAgaaatttctatgaaaaatcGCATCAATATTATGATAAATATTCCGAAACTACTGAAAAAGCCCACCAAAATCATGATAAATATTTCCAACCTTCCGATAAAGCCCagcaaaattatgataaatattCTCAATCATCTGTTGAGAAACCAAAGGCAAAATATagggataaaaaatatggaaatgatAGCTTCTACCGATATAATGATTATTCTGCAAATAAAAGGAATCAAAACATGCCAGATTATAGAAGGAATGATTATGAATCGAGAGATCCTGGACACTTGAATCAATTCAAGCCTGGCTTCAAACCATATACTGATGCTAGATCTAATAATAAATGCGACGATGAAAGTCTTCCGAATGACTGGAGAAAATCGAGAGCAAACAatggaaaaaatgcaaaagaatATCTTGTTAAATCCAATAAAAAACTAGATGCAGCATCTCAGAAAGAGAGATTAGAAGAAATGCTGAACCGCCGCATTTTAGAATGTCTGGTATGTtgcgaaaatattaaaaatagcgATAAAGTTTGGTCATGCATACTTTGTTATCACATATTACACCTAAGCTGTGTAGCTGCTTGGGCGAAATCATCCAAAATAGAAAGTAGCTGGAGATGTCCAGCATGCCAAAATGTATGCAGTAAATTACCGAAGCAATACAGATGTTATTGTGATAAAACATTAGAGCCCAGATTGGAAGCCGGTACTATACCGCATGGTTGTGGGGAAATGTGTCTGAGAAAAGGGCGTACATGTGAACATAAATGTACCATATTGTGTCACCCAGGACCTTGTCCTGATTGTTCCATTATGGTCGAAAAACAGTGTGGATGTGGTGCTACAAAACCAATCGTAAAATGTAGTAATGAAATAGAAATTGTTTGCAATGCAATTTGCAATAAAATCTTGAAATGTGGTTCTCATAGTTGCCAGTCAAAATGTCATTCAGGAGAGTGCAGTCCTTGCAATGAAACTATCATCCAAGAATGCTTTTGTGGCAAGGAAGGGAGGAAAGTTCAGTGTTGTGCAGAATATAAAGGCCAAACTGAATATATTTGTGGTGAAATATGTGGAAAACTATTATCTTGTGGCAACCATACATGTCAAAAATTATGCCATGGCGGGCCCTGTGATGTCTGTGATAGAGACATAGAcgtagttcaaacttgtccgtGTGGGAAGACACGTCTTTTGAAACCAAGATGTTCTTGTCGTGATCCAATTCCTTGCTGTGATAAGATTTGTTCGAAACCTTTGAAATGTGGCCAGCCAAGCTCCCCTCATAGGTGTGAGGAATATTGCCACGAAGGAGATTGCCCTCCTTGTCCTTTAACTACTGTGGTTAGATGTCGTTGTGGCTATATGGACAGGGAGTTGTCCTGTCAAAAATTGACTACAAAGGCTGACGATGCCAgatgtgaaaaaaaatgtaccaaGAAACGCTCTTGTGCCAAACACAAATGCAACCAACGGTGCTGCATAGAAATTGAACACATCTGTCCTCTACCATGCAACCATCAACTTTCATGTGGTCAGCACCGTTGTTATCGTACTTGCCATTCCGGTAGGTGTCCTCCTTGTATGGAAACCAGTTTTGAGGAGCTCTATTGCGAATGTGGAAAAAGTGTGCTCTTCCCACCTATTCCTTGTGGTACGAAACCTCCCAGTTGCAACGAACCATGTTCCAGACGACGGCCATGTGGTCATGAACCTAACCACTCTTGTCACACGGGTGCTTGCCCTCCTTGTACAGTTCTTTCTAAAAGGTGGTGCTATGGAAATCACGAGCAACGAGCAGCAATTCCCTGCCATCAAGAAAACTTCGGTTGTGGTTTGCCTTGTGGGAAAGATATGCCTTGTGGCAGGCACAAATGTAATAAAACATGTCACGATGGCCCTTGTCCGAGTCCTTGTAAACAGCCATGCAGTGTATTGAGGAGTTTATGTGGACATCCTTGTGGTAGACCATGCCATGGGCCTCCATGTCCAGAAAGCAGTTGTAGACAAAACGTGCCTATTACGTGTTTGTGTGGGGTCCAGAAAAGCACAAGACCTTGCATAGAAGTTGCTGACGAATTCAAGAATAtacaaatggcacaaatcaaGGATAAAATGGGCGTATTATATAGTAGTCATGCTGTTGATATTTCCGACATTCTGAACGTTCCTAAGAAACCTTCAGTGCTCAAAATTTTGGAGTGTACAGAAGAATGCCGAGTTTTGGAAAGGAACCGCAGGTTAGCCATCGGTTTGCAAATACGTAATCCAGACCTCAGTCAAAAATTAACACCGAAGTACTCTGACTTCATGAGACTTTGGGCAAAAAAAGATCCCCATTTCTGTCAGAAAGTTCATGACAAATTAACTGAACTTGTTCAATTAGCCAAGAACAGCAAACAAAAAAGCCGATCCTATTCCTTTGAATCAATGAATAAGGATAAGCGTCATTTCATCCACGACTATTGCGAACATTTTGGAGTAGAGAGTGCAGCTTATGATATGGAACCAAATAGGAATATAGTAGCTACTGCGATCAAGGAAAAATCGTGGCTACCCAGCATGGGCTTATTAGAAGTCATACAAAGGGAGAATGGCCAAAGAAAGGTGCCAGGACCAATGTCTGTGTCAAGTAGAGCTACCCCCAGTAAACCAGAAATCATGTTGCTGAAGTTGCCCAGCAGAATACAGAGATCTAGTACTCCACCTGGTGAACTTGTTGATACCTACTACAATCCACCCTTATAG
- Protein Sequence
- MSTQNSEEKTFPIQSQAYFGNHSQNLNVNLSDLQPTAQEFYPTSAGSHNGAVKKKPQQYYNKNRVRDNGRGRYQYGTGRTFNGFKNDYGTNHVNDNLDITEKYGSSSSSQNLEKMSNSRRNPELSDDKVFVKNYHQPFSKHVLAAGSGYDKRNFEDPNSLQNRYGDGENIPSSGSARSFRGYGGNFEKSKRNYPKNSERNFYEKSHQYYDKYSETTEKAHQNHDKYFQPSDKAQQNYDKYSQSSVEKPKAKYRDKKYGNDSFYRYNDYSANKRNQNMPDYRRNDYESRDPGHLNQFKPGFKPYTDARSNNKCDDESLPNDWRKSRANNGKNAKEYLVKSNKKLDAASQKERLEEMLNRRILECLVCCENIKNSDKVWSCILCYHILHLSCVAAWAKSSKIESSWRCPACQNVCSKLPKQYRCYCDKTLEPRLEAGTIPHGCGEMCLRKGRTCEHKCTILCHPGPCPDCSIMVEKQCGCGATKPIVKCSNEIEIVCNAICNKILKCGSHSCQSKCHSGECSPCNETIIQECFCGKEGRKVQCCAEYKGQTEYICGEICGKLLSCGNHTCQKLCHGGPCDVCDRDIDVVQTCPCGKTRLLKPRCSCRDPIPCCDKICSKPLKCGQPSSPHRCEEYCHEGDCPPCPLTTVVRCRCGYMDRELSCQKLTTKADDARCEKKCTKKRSCAKHKCNQRCCIEIEHICPLPCNHQLSCGQHRCYRTCHSGRCPPCMETSFEELYCECGKSVLFPPIPCGTKPPSCNEPCSRRRPCGHEPNHSCHTGACPPCTVLSKRWCYGNHEQRAAIPCHQENFGCGLPCGKDMPCGRHKCNKTCHDGPCPSPCKQPCSVLRSLCGHPCGRPCHGPPCPESSCRQNVPITCLCGVQKSTRPCIEVADEFKNIQMAQIKDKMGVLYSSHAVDISDILNVPKKPSVLKILECTEECRVLERNRRLAIGLQIRNPDLSQKLTPKYSDFMRLWAKKDPHFCQKVHDKLTELVQLAKNSKQKSRSYSFESMNKDKRHFIHDYCEHFGVESAAYDMEPNRNIVATAIKEKSWLPSMGLLEVIQRENGQRKVPGPMSVSSRATPSKPEIMLLKLPSRIQRSSTPPGELVDTYYNPPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -