Chae005350.1
Basic Information
- Insect
- Chrysolina haemoptera
- Gene Symbol
- -
- Assembly
- GCA_958298965.1
- Location
- OY282584.1:47284513-47295600[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.21 32 6.9 0.1 2 23 303 325 302 325 0.88 2 17 0.0015 0.23 13.7 0.3 1 23 382 405 382 405 0.97 3 17 0.5 76 5.8 0.7 1 21 411 431 411 432 0.92 4 17 4.5 6.9e+02 2.7 1.4 1 23 502 526 502 526 0.82 5 17 0.00059 0.091 15.0 4.5 1 23 529 552 529 552 0.97 6 17 0.046 7.1 9.0 2.8 2 23 559 581 558 581 0.95 7 17 0.0011 0.17 14.1 3.3 1 21 694 714 694 715 0.95 8 17 0.0017 0.26 13.5 2.1 2 23 727 749 726 749 0.92 9 17 0.71 1.1e+02 5.3 1.5 1 23 752 775 752 775 0.95 10 17 0.01 1.6 11.0 0.5 3 23 782 802 780 802 0.96 11 17 0.18 27 7.2 0.2 1 23 806 829 806 829 0.96 12 17 0.77 1.2e+02 5.2 0.5 2 23 836 858 835 858 0.94 13 17 0.17 27 7.2 0.9 2 23 867 889 866 889 0.94 14 17 1.7 2.5e+02 4.1 0.4 3 19 896 912 895 913 0.97 15 17 5 7.6e+02 2.6 2.9 2 23 1069 1091 1068 1091 0.93 16 17 0.46 70 5.9 0.6 2 23 1098 1120 1097 1120 0.94 17 17 0.19 30 7.1 1.0 1 23 1133 1155 1133 1155 0.96
Sequence Information
- Coding Sequence
- ATGGAAACAAAATTGTGCCGAATCTGTGGAAAGTTGGGACAAAACTTTGTACACATTTTCAAAACAGAGGGACTTAGGAGCAAGATAGAAACATGTTTGCCAATAATTGTTTCTCCTTACTGCCTCCTTCCTGATACAATTTGTGGAGAGTGCACTGAAAATATagacaacttttatttattcataaaaaactgTTTGCAGAGCATTATTATACTTGAAACTCAGTATGATATTCAGGagtcaagcttgaaatcaaaacaaaaaagggATAAAGGTTGCTATGTTGATTTTAATTATAGAAAGATCAATAAGGGAATCCAGACTGATGACTATCTTGACGTTCTGTCAGGTAAAAATAATGATCTTGAAGAATTCCGTTTAACTTTCCCTCAGACcataacttttttgaataacGAAGAGTCCGTATTTAAAAAAGAGAGTCTGAGCTTAGTTGAATATGATGTCGATACAGATTCCAGCTTGGAGGAGTCTGTCTTCAATAATGGAAAAGTTGTTTTGGGTGAAAAATTGCGATCCATTAACGAAATATCTAAATTTGTTGACTCTGTAACAAATAGAACGCCTCTTCCTACAAATTTGCTGTATTTTGatgattcagaaaaaaaactaaTTAGTGAAATCTCCCAAAGAAAAAGATTGAAACGAGCAAACAATGACATAAAAATTTCtaaaccaaaaattttcaaactggaTACTACAAATAGGAGAAAAAGTAAAGTACCAAAGAAACTAGATACTCAGGATATTGGTAAAATCACCACAGTtacttttgaaattgaaaaagctgATACACCTCAAAAATCCCCTAAAAAACCAAATAGGGATACTGATATTCAGCATACTCTAACCTGTCAGGAAGAAAAATTGCTGTCTTCTTTACCACAAAGTTGCTTGCTTTGTGATACACATTTCTCTGGTCCTGCTGCTTTAGCTTCACATGTTTTTGAAGCACACGGTATTGATATGGCTGAAGTTGTTTCCTCTGGCTCTGGGGAATCCTTCCCAGAAAGATGTAGAAAGAAAATTCCAAATCTTGTTAAAATTTctgatttgaaaaaaactgattcagtggATGATAACCAGTCAGATCGCCAACAGGAACCTCCAACGCTCCACCCAAGCTTCGTATGTCCTAATTGCCCAGGTATATTCACTAGTAAACAGGACTTTATGATGCACCTTCGTCTCAAACATGTACAGCTTGCTGCTTATCTTTGTGGCATCTGCTTGACTCAGTGTACTTCGTACATGAACTTAAAAAGTCATCTTCAAATTTGCTCACAGCAGCACCAAATAactacaaaatatatttgtcaGGTGTGTCAGTATGGAGATGACAACTTCAAGTGGCTTGAGAATCACGTTTTGGTTCATGATTTTTTGTTGGAAGCATGCCGAAAGCAGTTGAAGATGTTTGACCCAGAAGATTACATTGATACAAACGAAAACTTGGAAAATATTGGTTTGTCAGTTTCCAAAAGTTTCAGTTGTAATGAATGTGGCTTGAGTGAATTTCAGTCATTCAAAGAGTTCAGTAGTCATAGAAGGAATAGCCATTCTATTTACCACTGTGATTTATGTAATAAGTTTTATGGGCGCAACTCACATCTGTGGAAACACGTAAATAGACTGCACAAAGGACATCCTAGTATAACCTGTCAACTTTGTTATAAAACGTCTGCATCCAAGTACCACCTATCACAACACTTCAACAAAATTCATCTAACAAAAGCAACCAAACCGCAAACTTTGGAATCAGTATCAAATGAAAGAGACTGTCATGACGATTTTATGTTAACACAGTTCTCTGATTTTGATATTGGACAGGCTTTCATGAGAGAAGAACTCATGACTCAAGAACAGAAGAGTAATAGTGATCAAGATCAGGAATACAACTCTAATAATCAACCGTCAGATGCGGAAGATGAACTGATTATCAAACAAGAACTCTTTGAAATAAACCAAGAACCACCATCGGCTCCGAAAGAAATAGACTCTTCTCATGATCTCTATACCAATATCATAACAAACTATACACCTCCTGTGAATGAAGGCGATTATAAGTGCCCAAAATGTTCCAAGGCCTTTCACAagaaggtattactgaaaaagCACAAAAAGAACTGTAGACCAAAGATGCAAAAAGATCTCCTTACACGTTGTAAAACATGTTCTAGAATATTCAAGGATCGTCAGAGTCTAACCAAACATTTGGTCAACTATCATTCTGAGTATACTTGCGAgatttgtagtgaaaaagtgcaGAGTAAGTGTGAAATTGTATCTCATATTAGATTCCGACACCCTGGTTGTCATTTGTTTTGCAAAATATGTAAGAATATATTGAGAAGTAGGTATGATCTCCAGGAGCATGTGCGCATCCATTTAGATTCTTACATTTGTCAGTTTTGCGGAGATTCTTTACCAAGCAAAATAAAACTCAAAATGCATATTCTTAGTTTGCATCGTAAGATTTTGAGTCTATCATGTGGCATTTGCCTAAAATTGTTCGAAACTCAGCACATTCTTCGAGATCATGTTCGATTGATACATAAAACCCAATTGGCGCCACTAACTTCTTGCACTGTGTGTGGCAAAAATTATGGATCAAAATGGAAAACGTATGACCACCTAAATAAGTCTCatggaagaatattcaaagcTTGCAAGACTTGTCTGGAGGTGTTTGATAATGATGCTCAATTACAAGCACATTGTGATGTCACAGCACATGGATCCCAAAATAGCAACGTGAATGCCAGCACACTAAGAAACAATATTATGGCTCATATTACATCAGCGATAAATGAAGTAGCGGCTAGCAATGATGGACATAATGAGAATGACACCGACAGTGAAGAAGAAGTTGAAAGTGATAGTGAgttcgaaaatattgaaaatgagcaGTGTAACGAAAaaccgaatttttttttatcgcatgATAAGAAAATATCTTTGTTGGAAAAACGCCTTTTGGGTAAAAATGCAATTGAAGACGATTGCCTATCGAATAGTGATGCACAAAttccaaccaatataaaaagACATAATTCATCaagtgaaggaaaaaaatcggcGATATTTATCAGAAAAGAAGAAGATCCAGAACGCAATCTCTCACCTTCTAATCCTCAAACAAACTCTTCCAAACGAACTGTATATGTTAACAGTAATGATCCATCATACTGTGAAATTTGTTTTAAAACATGGCCAGCCAAAAAGCATCTTTGGCAGCATTACATTCGTTGTCATAAAACAGACGCTGCTACGGTATGTGGCATTTGTCTCAAAACAAACGAAAGTTATAAGAGTTTACAGAAACATTTACGTGAAAATCACCCTACTTTGTTGCATGGACAAGGGTATggatcaaatttcatttgtaaaatttgtggAAGGTACCACAATGCAAGTTCTAAATTGCGTTTGCATATGGTAATACATGAAAATTTCGATTGGAAGTTGATAGAAGAAACCACCTCACCGGTGAAACAATTAGATAATACCAATAAACCTACCAATGGGTACAATGATATCAAAGAGGAACCTCAAAAGGAAAAAAGTGATGACAACATAAACTATGACAGTTTTATAGAACAAGTTGAATGTTCTTCCCAATCTGAAAATGAGGAATCGGATAATGAATGTTTGCAGACTGAAATTAAGCAAGAACAGGAATCATCTTCTtctgatgatgatgaagatgaGGAGAGTGATGATTCAGCAATGTCAGAAATCTCGGTGCAAGTCCAGGAGTTGAATGATATTGTGGCCAAAAAACAGATAGCTCCTGAAAAACAAAGCTATGTTCCTACGGGTGATGAATCGAGTTCCAGTTGTACCGATGAACACAATGCACCTAGTAAGAGTAATTCTTCTGATGATGAATGCTCTGAAGGATCTGACACACTTTCGTCCCAGAGCAAGTTCAACAATAGGTCAAATTCGAATTCTATGAATTCTACCTTGAATAGCaatattttcaatcgaaaaccTGAAGAATTAGATTCAGCTATAAAATCGATAAGTTATGAATGTATGTTGCCAGTAGATCTGACTTCTGAACAGGATTATTGCGAACTACAGAATAATTGTCCCAACGAGAATGAAATTGAGTCAGCTGTTGGAAGCATACTCTAA
- Protein Sequence
- METKLCRICGKLGQNFVHIFKTEGLRSKIETCLPIIVSPYCLLPDTICGECTENIDNFYLFIKNCLQSIIILETQYDIQESSLKSKQKRDKGCYVDFNYRKINKGIQTDDYLDVLSGKNNDLEEFRLTFPQTITFLNNEESVFKKESLSLVEYDVDTDSSLEESVFNNGKVVLGEKLRSINEISKFVDSVTNRTPLPTNLLYFDDSEKKLISEISQRKRLKRANNDIKISKPKIFKLDTTNRRKSKVPKKLDTQDIGKITTVTFEIEKADTPQKSPKKPNRDTDIQHTLTCQEEKLLSSLPQSCLLCDTHFSGPAALASHVFEAHGIDMAEVVSSGSGESFPERCRKKIPNLVKISDLKKTDSVDDNQSDRQQEPPTLHPSFVCPNCPGIFTSKQDFMMHLRLKHVQLAAYLCGICLTQCTSYMNLKSHLQICSQQHQITTKYICQVCQYGDDNFKWLENHVLVHDFLLEACRKQLKMFDPEDYIDTNENLENIGLSVSKSFSCNECGLSEFQSFKEFSSHRRNSHSIYHCDLCNKFYGRNSHLWKHVNRLHKGHPSITCQLCYKTSASKYHLSQHFNKIHLTKATKPQTLESVSNERDCHDDFMLTQFSDFDIGQAFMREELMTQEQKSNSDQDQEYNSNNQPSDAEDELIIKQELFEINQEPPSAPKEIDSSHDLYTNIITNYTPPVNEGDYKCPKCSKAFHKKVLLKKHKKNCRPKMQKDLLTRCKTCSRIFKDRQSLTKHLVNYHSEYTCEICSEKVQSKCEIVSHIRFRHPGCHLFCKICKNILRSRYDLQEHVRIHLDSYICQFCGDSLPSKIKLKMHILSLHRKILSLSCGICLKLFETQHILRDHVRLIHKTQLAPLTSCTVCGKNYGSKWKTYDHLNKSHGRIFKACKTCLEVFDNDAQLQAHCDVTAHGSQNSNVNASTLRNNIMAHITSAINEVAASNDGHNENDTDSEEEVESDSEFENIENEQCNEKPNFFLSHDKKISLLEKRLLGKNAIEDDCLSNSDAQIPTNIKRHNSSSEGKKSAIFIRKEEDPERNLSPSNPQTNSSKRTVYVNSNDPSYCEICFKTWPAKKHLWQHYIRCHKTDAATVCGICLKTNESYKSLQKHLRENHPTLLHGQGYGSNFICKICGRYHNASSKLRLHMVIHENFDWKLIEETTSPVKQLDNTNKPTNGYNDIKEEPQKEKSDDNINYDSFIEQVECSSQSENEESDNECLQTEIKQEQESSSSDDDEDEESDDSAMSEISVQVQELNDIVAKKQIAPEKQSYVPTGDESSSSCTDEHNAPSKSNSSDDECSEGSDTLSSQSKFNNRSNSNSMNSTLNSNIFNRKPEELDSAIKSISYECMLPVDLTSEQDYCELQNNCPNENEIESAVGSIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00328710;
- 90% Identity
- iTF_00328710;
- 80% Identity
- -