Basic Information

Insect: Chrysolina haemoptera
Gene Symbol: BCL11A
Assembly: GCA_958298965.1
Location: OY282585.1:19210814-19218454[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 1.1e-06 0.00018 23.5 3.2 1 23 305 327 305 327 0.96

2 5 1.8e-05 0.0028 19.7 4.6 1 23 333 355 333 355 0.99

3 5 1.5e-07 2.3e-05 26.3 2.9 2 23 543 564 542 564 0.97

4 5 1.1e-05 0.0016 20.5 3.3 1 23 570 592 570 592 0.99

5 5 6.9e-05 0.011 17.9 0.4 1 22 600 621 600 621 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	1.1e-06	0.00018	23.5	3.2	1	23	305	327	305	327	0.96
2	5	1.8e-05	0.0028	19.7	4.6	1	23	333	355	333	355	0.99
3	5	1.5e-07	2.3e-05	26.3	2.9	2	23	543	564	542	564	0.97
4	5	1.1e-05	0.0016	20.5	3.3	1	23	570	592	570	592	0.99
5	5	6.9e-05	0.011	17.9	0.4	1	22	600	621	600	621	0.97

Sequence Information

Coding Sequence: ATGAAGAATAGGGaaccCAGTAACTACGTTTGTTGTACCTGCAAAGCCCGTCTGCATTCGGCTTGGAGACTGGTTCAACATGTTCAACATGCACATGGAATCAAAATCTACGTAGAAAGTTCACCTACAAGTTTGAAAAGCGGCAACAGCAATAACCACAGTGCGAGTAGTACGACAAGTAGCTCTTCAGGATGTTCCTCTGGTGGCGTACAACCTCCTCCTCCAAATATGAGACATCATCTTCTGCCACCTCCAGACATGCATAATCCGTTCGGCGTTGGCGGTTTACTCAGGCTACCTTTACCACCTCTGAGTCATGGCCCGGTTCCACCAACTCCCCTTTTTTCCCGACCAGATCATCATTATAGAATAGACCAATTGGTAAGCGAGCAGTTTCGTCATCATGGATTAAATTTAGCTGCGGCTGCGGCTGCAGTAGCTGCAGGGAATGTTCCGCCACCTCCACCTCATACGAACTTTCCATCTCCAGCTGAAAGAGTCAGTTCAGTAAATAGTTTACCTCCGAGGGAAAGAAATACTCCCAATCAAGCTCTATCTTTGGAACCACAACTGGATTTTTACTCACAGCGGTTGAGGCAATTGGCAGGCACCACCAGCCCGGGGGCGGCGCAGGCGAGCTCGCCGTCACCCCGCAAGCACTCACCGCCTTTCGCAAGTCCTTCCCCTTCTCAATTGCCGCCAACTTCTATCCCCAATAATACCAGCTCTAGTAGTAGTAACTTccataataacaataacaacaacagcAGTAATAGTGGGAACAGCAGCAGACCACCTAGTACATCTCCTCCTAATAAAGGAGATGAACAGCTAATAAATACACCTAGGTCAGCGTCAACCCCACCTGGCAAACCAGGCTCTCCTAGAAACTCAAACTCTGCTGATGCAATCCATGCTTGTGATTACTGCGGAAAAAAATTCCGCTTTCAGAATAACCTTGAAGTTCATCGAAGAACCCACACAGGGGAACTTCCTTACAAATGCACTGTTTGTGACCATGCTTGTGCTCAGAACTCAAAACTCAAAAAACATATGAAGATACATCGAACATCAGTTGATCGAACAAGTAATGCTGGATCTGTAGAAACTTTGGACGGAGAGGACAGTGAGGACGAAGAATTAGAAGACGAGGAAGAAGACGATGAACTCGAAGAAGAGGAAGCCGAAGATTTGAGTTTACCTAGTCAGATTCCAAAAAACGCAACGAATCCATCAGCTTCACTGGTAGGTGAACTGATGGATAAATTTGGATTCAATAATATTGCCCAGTACAGCGAGGCCTACCAACAAGCCCTACAAGAATCTAACAATGCTATTAAACTTCATCTTGCTAGCAAAGATCGTGACAATAACAATACAAGTTTGTCCCAACTGAAAATTAGAGAAAGCTTTTCCAAAGGAATGTTACCCGGTCCACCTCCACAACCCATTCCACTTTTTCCGCCATTCAATGATTCCTATGAAGCATCTAAGAGACTGAAGTTAGAGTTGGAACGAAATGATTGGTGGTTACCAGGTTTAAATCGTGACAACAAGGGAGGAATTCCAGGGCCAAGTGCACTACTACCAAACCCCCTAATGAAGAAAGAGTCGCGGCGAAACGATACTTGCGAGTATTGCGGAAAAGTGTTCAAGAATTGTTCGAATCTAACCGTTCACAGAAGATCGCACACCGGCGAAAAACCCTATAAATGCGAACTATGTTCCTACGCATGTGCACAAAGTTCAAAACTGACGAGACACATGAAAACCCATGGTCGAATAGGTAAGGACGTGTACCGATGTAGATTTTGTGAAATGCCGTTTTCAGTTCCTTCGACTTTGGAAAAGCACATGAGGAAATGTGTAGTGAACCAAGGAAAAGGTCACTTACTTAGTACATTACCTATGTTGTCGGGAGATGAAGATTCATCTACATCTACAAGCATCACTTCCAAAGAGGCAGTATGA
Protein Sequence: MKNREPSNYVCCTCKARLHSAWRLVQHVQHAHGIKIYVESSPTSLKSGNSNNHSASSTTSSSSGCSSGGVQPPPPNMRHHLLPPPDMHNPFGVGGLLRLPLPPLSHGPVPPTPLFSRPDHHYRIDQLVSEQFRHHGLNLAAAAAAVAAGNVPPPPPHTNFPSPAERVSSVNSLPPRERNTPNQALSLEPQLDFYSQRLRQLAGTTSPGAAQASSPSPRKHSPPFASPSPSQLPPTSIPNNTSSSSSNFHNNNNNNSSNSGNSSRPPSTSPPNKGDEQLINTPRSASTPPGKPGSPRNSNSADAIHACDYCGKKFRFQNNLEVHRRTHTGELPYKCTVCDHACAQNSKLKKHMKIHRTSVDRTSNAGSVETLDGEDSEDEELEDEEEDDELEEEEAEDLSLPSQIPKNATNPSASLVGELMDKFGFNNIAQYSEAYQQALQESNNAIKLHLASKDRDNNNTSLSQLKIRESFSKGMLPGPPPQPIPLFPPFNDSYEASKRLKLELERNDWWLPGLNRDNKGGIPGPSALLPNPLMKKESRRNDTCEYCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRIGKDVYRCRFCEMPFSVPSTLEKHMRKCVVNQGKGHLLSTLPMLSGDEDSSTSTSITSKEAV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01481208;
90% Identity: -
80% Identity: -