Chae005498.1
Basic Information
- Insect
- Chrysolina haemoptera
- Gene Symbol
- -
- Assembly
- GCA_958298965.1
- Location
- OY282584.1:50138091-50142527[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.14 21 7.5 3.2 3 23 171 192 170 192 0.95 2 12 0.0044 0.68 12.2 2.8 1 20 222 241 222 244 0.95 3 12 5.4e-06 0.00083 21.4 3.3 1 23 250 272 250 272 0.97 4 12 0.17 26 7.2 0.1 2 21 279 298 278 299 0.92 5 12 3.8 5.8e+02 3.0 1.8 2 20 304 321 303 323 0.92 6 12 6e-06 0.00092 21.2 1.4 3 23 379 399 378 399 0.98 7 12 0.00032 0.049 15.8 1.4 1 23 405 427 405 427 0.99 8 12 0.0001 0.016 17.4 0.5 1 23 433 455 433 455 0.97 9 12 2e-05 0.003 19.6 5.7 3 23 462 482 461 482 0.97 10 12 6.9e-07 0.00011 24.2 1.0 1 23 488 510 488 510 0.98 11 12 0.04 6.1 9.2 6.3 1 23 516 538 516 538 0.98 12 12 0.037 5.6 9.3 8.9 1 23 544 566 544 567 0.93
Sequence Information
- Coding Sequence
- ATGGATAATCCAGCAGTTGTAACTTTCAACGAAATATGTAGAGtttgtttaatgaaaaaagAGAACATGAAGCAGTTATTGGATCCCTGTGATGAAGTAATCGGACtcgtttcaaaattatcaaggATTATGAATTTGGAGGTTGAAATAAGTGACACTCTCCCATCCTTTTTGTGTCTGAATTGCGAGTACAAATTGAGAACATCTTATGAATTTCATCAATTGTGCCATAAATCTCATCAGTTTATATTAACATGCCTTAGTGCCCCTAATATAAATCCAAAAAACGCTGAAATTCATCAGTACATACAATGTGATAATAATGCTTGTGACACTAGTTTGTATTATGaatcagaaaattcaaattgtgTTCAGGAGAGTGAGAAAAAATTTACCGAAGTATGTAAAAAGTCAAGAACGAAACAAGTTATGAAATTGACCCAGTATTCATTCGAAGATGTTGAAAAAGTCATACAAGAAATTCGACAAAAACATATGGGAAATAGGCATTGTTTATATTGTAGTTTTTCATCAAAAGATTCCAGATCTTTATCAATTCATATGACCAGACAACACTGgaaatataaGGATAGATGGTGTTCTAAATGTAATCAAACAGTACTGAATTTAAGTCAACATGTCCAAAACGAGCATAAAGATGATTTCAAATGCCCTTTTTGTGGAAAAGAAACAAGCGATATTAGCCACTTCATGGAGCATTTAGCCTGCCATACTGtgGAGCGTAAATTCGTATGTAATGAATGTGACAAGTGTTTCATCTCAGCCAGACACCTGAAAGCACATTCCAAGGTTCATAAAACAGCAGAGCAGTTGTATTGTCATATATGCTTAGTAAGTGTGTCAGATAAAGAATTGTTGAGTGAGCATTTGATATCTCGTAAGAAACAGAGGTGTAAAGTCTGTGACGGAATATTTGATTGGAATCATTATGAAACCCATGAATGTTTTACAAGTAGAGAAATTCAACTTACCAAAATTGATAATGACCATAGTACCATCAATTTACAGCCAGCGAGcgCCGTGAAAAACCAGGTTATTTGTTCCAAGTGTAATAAGATTGATAATCTCAATGTTCTTAccagaaataaaaatgataatgaaatgAAGGCACTGTGCACATTCTGTGGAAAACAGTTCAGGACACAATCAAAATTATCAGTTCACTTAAGGATACATACAGGGGAAGCTCCATATAAATGCTCATATTGTGATGCAAGAATGGCTACGAGAAGTCATCTTGTAGTTCACGAAAGAACTCATACTGGTGAGAAGCCTCATGTCTGTAAAGCCTGTGGGAagGGGTTTGCACAAGCTAGCGTTCTCAAAACACACACAAAGATACACACAGGACGGACTGAACATTGTCTGCTATGCCCCAAAAAATTTTGTAGACCATCAGAACTCAAGCAGCATATGAGAAAACATACAGgggAAAAACCATATCCATGCCCATATTGTGAGAAAGCTTTCACTCAAAAAAGCCATCTTGTTGAGCATTCATTGACTCACAGTGGATTGAGGCCATACACATGTGAATGTTGCCATAAAGGATTTAAAAAAGCTGCTACCTTGAAGTCTCATTTTAAAATGCACTTTGGTAACAAACCTCATAAATGTGAATTGTGTAATGAGAGTTTTACCACCTCACATTTACTCAATTTACATTGTTCAACCCATCATTTGACTGGTAATGTGAAAATAAATGTCATTGAAAGAAATGAGGGAGAACAATATGTTATATTGGAGCAGTTATTGGAACCATGA
- Protein Sequence
- MDNPAVVTFNEICRVCLMKKENMKQLLDPCDEVIGLVSKLSRIMNLEVEISDTLPSFLCLNCEYKLRTSYEFHQLCHKSHQFILTCLSAPNINPKNAEIHQYIQCDNNACDTSLYYESENSNCVQESEKKFTEVCKKSRTKQVMKLTQYSFEDVEKVIQEIRQKHMGNRHCLYCSFSSKDSRSLSIHMTRQHWKYKDRWCSKCNQTVLNLSQHVQNEHKDDFKCPFCGKETSDISHFMEHLACHTVERKFVCNECDKCFISARHLKAHSKVHKTAEQLYCHICLVSVSDKELLSEHLISRKKQRCKVCDGIFDWNHYETHECFTSREIQLTKIDNDHSTINLQPASAVKNQVICSKCNKIDNLNVLTRNKNDNEMKALCTFCGKQFRTQSKLSVHLRIHTGEAPYKCSYCDARMATRSHLVVHERTHTGEKPHVCKACGKGFAQASVLKTHTKIHTGRTEHCLLCPKKFCRPSELKQHMRKHTGEKPYPCPYCEKAFTQKSHLVEHSLTHSGLRPYTCECCHKGFKKAATLKSHFKMHFGNKPHKCELCNESFTTSHLLNLHCSTHHLTGNVKINVIERNEGEQYVILEQLLEP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -