Chae015088.1
Basic Information
- Insect
- Chrysolina haemoptera
- Gene Symbol
- gag-pro-pol
- Assembly
- GCA_958298965.1
- Location
- OY282587.1:8931427-8939803[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.025 3.9 9.8 0.4 2 23 487 509 486 509 0.96 2 11 0.044 6.8 9.1 0.1 1 23 528 550 528 550 0.97 3 11 0.0044 0.67 12.2 2.2 1 23 554 576 554 576 0.96 4 11 0.021 3.2 10.1 0.7 1 23 582 605 582 605 0.96 5 11 0.006 0.91 11.8 0.2 1 23 611 633 611 633 0.94 6 11 0.011 1.6 11.0 2.4 1 23 639 662 639 662 0.93 7 11 5.2e-05 0.008 18.3 1.0 2 23 674 696 673 696 0.93 8 11 0.0016 0.24 13.6 2.3 3 23 709 729 707 729 0.94 9 11 2e-05 0.0031 19.6 1.4 1 23 735 757 735 757 0.98 10 11 5.3e-06 0.00082 21.4 1.8 1 23 763 785 763 785 0.99 11 11 0.16 25 7.3 0.7 1 19 791 809 791 812 0.96
Sequence Information
- Coding Sequence
- ATGGACTTGTTCAAATCAATCGCTTCTGAAGATCAGCTAGGCTTTACTGATAAAATAACGGCCCATATCGATACAGGAGAGCATCGTCCGTTTAAAAAGAGACAGTATAGGATGTCCCCATATATGCTGGAGCATCTTAATAAAGAACTAGATAGAATGCTAGCATTAGGTATCGTTGAAGCTTCGTTCAGTCCTTGGAGCTCACCAGTATTATTAGTAAAAAAGGCTAATGGTGAATACAGTTTTTGTTTTGATGGTAGAGCCCTGAACGAGATAACTAAAAAGGATTCTTATCCTTTACCTTTAGTAGATGATATCCTGAATATGCTTAGCAATGCTAAATTTATATCGACAATTGATCTTCGAAGTGCATTTTGGCAAATACCCCTAGATGATGAGATTGAATTCTGCATACAAGCGGACGCCAGCGAGGTAGGATTGGGAAGTTTACTTACTCAAGTCCAGAATGGTGAAGAAAAAGTCATAGCGTATGCTAGTAGGAGTTTGAATCGAGCAGAAAGAAATTATTCAGCAACGGAACATAATGCTTCAGCTCATACTGGGAAAGTTTTCAATGAGTTTGTCAAGCAGTACAACATTTCTAAAGTTTGGTATAATTGTAGGTACCACCCTCAGGTGAACCCTACAGAGAGGGTTAATCGTACAATAGGAACTTCCATAAGGTGTTTCATAAAAGAATCCCACAAGCACTGGGATAAGGAAATTTTGCGAATTCAGCACGCACTGAACTCCGCCACTCATGAGGTAACTGGTTTCAGCccaaattttcttaattttggcaGAATAGCCCCTGTCTCTGGAGATTATTATGGAGATGCAGTTGATTTTGTGCTGAATAATACCGCAGAAGCTAGGAGAAATTATTCTGAGGAGTTGAGAAAACTCATTCCCCTGTATAAAAGGGTTCAGGAGAAACTCTCAGCGTCCTACGTTAGGAACACTCACTATTACAATTTAAGGAAGCGTGAACATGTTtttagagaaaatgaaaaagtctgGAAGCGAAATTTTGTGTTATCAGATGCTGCAAATGAATATGCATCAAAATTAGCACCCAAGTATGTCTTATGTAAAGTAAGGAAAGTTTTATCGAAAGTGGCTTATGAGTTGAGTAATATGGATGACTCACCAGCAGGGCTTGAACGGACCGAGACCGAAGACCTGAATATCTCATTGAATCCAAAGGGAATTCAAGAAAGAGTCCTTTGGAAAGAAGAAGTTCGAAATAAGTACTCTGAAAAAACTCGTTCAATGCGAAAGAGAGCTTCAActgccaaaaattattatttgggaTCTGAAGGAACTGACGATGACTGCGATTTTGTACCAGAAACTAAAAAACGTAAAAAGAAATTATCCAGGAATGTTGCAGATATAGCAATAAAGAATAACAGGACTAGGGTTGCTAGGAAGAACTGTGATTCAAACAAACAATGGCCTTGTAAGAAATGCGATGAAATCATGCCAACTAAGAGAAAATTACTCGCCCATAGAAAAACGAACCACCCAAAGGTAGATGATGTGGAGCATACATTCAAATTCGATGAACATCAGGAGCTTTATGTTTGTAACACCTGTTCCGCAGAATACATAGAAAAGGACGAGGTGGAGCGGCATGTAAAGGCACATGAGGAACAGTACGAATGTAACATCTGCAATACAAAGTTCAAGAAGGCATACGATTTCGGTACCCACAACTTCACTCATGACCCCGAAAAAATGTTCCGCTGCCCACTTTGTTCGTATAGCACTGCGAAAAGAACGGGTTTTCTGGTTCATATAAACTACACCCATTTGAAAAAGTTCGGGTACGTCTGCGATACTTGTGGAAAAGGTTTCAATGATATAATTCTATATAAAGAACATAATAATGAGCACTTGGGCATCAAACCTTTCTCGTGCATTGTCTGCTCGAAAAGTTTCACCTTCTCTAGGTACCTTTTTACTCACCAAATACGATCGCACAGAGTAGGCATCGAAGGCCAGCTATTACCCAATCAGTGCTCCGTGTGTAACAAGGTTTTCAGCAAATCGGTTACCTTGCAGAAACACGTACAAGATCGCCATATCAAAAACAATCTACCCCATCTCAAGAAGCACCTTTGCGATACTTGTGGCAAAGGCTTCGCACAGAAAAACAAGCTGAGAGTTCATTGCAGGGTTCATACTGGAATTAAACCCTACACTTGTTCCTACTGCGCCAAGAGTTTCACAAAGAAGGATTACCTGGTAATGCACGAACGAGTGCACAGTGGCGAGAAACCGTATTCGTGTAAGTTTTGCGGAAAGTGTTTCAGCCAGGGGGCGCCACTCAGAATACACATTCGAACACACACCGGCGAGCGACCTTATATCTGTCAGTTTTGTACTGCGGGATTTACTTCTCGGGGGGCTCTTAATATGCACTGTAAAAATTGTACAGGGTatatctaa
- Protein Sequence
- MDLFKSIASEDQLGFTDKITAHIDTGEHRPFKKRQYRMSPYMLEHLNKELDRMLALGIVEASFSPWSSPVLLVKKANGEYSFCFDGRALNEITKKDSYPLPLVDDILNMLSNAKFISTIDLRSAFWQIPLDDEIEFCIQADASEVGLGSLLTQVQNGEEKVIAYASRSLNRAERNYSATEHNASAHTGKVFNEFVKQYNISKVWYNCRYHPQVNPTERVNRTIGTSIRCFIKESHKHWDKEILRIQHALNSATHEVTGFSPNFLNFGRIAPVSGDYYGDAVDFVLNNTAEARRNYSEELRKLIPLYKRVQEKLSASYVRNTHYYNLRKREHVFRENEKVWKRNFVLSDAANEYASKLAPKYVLCKVRKVLSKVAYELSNMDDSPAGLERTETEDLNISLNPKGIQERVLWKEEVRNKYSEKTRSMRKRASTAKNYYLGSEGTDDDCDFVPETKKRKKKLSRNVADIAIKNNRTRVARKNCDSNKQWPCKKCDEIMPTKRKLLAHRKTNHPKVDDVEHTFKFDEHQELYVCNTCSAEYIEKDEVERHVKAHEEQYECNICNTKFKKAYDFGTHNFTHDPEKMFRCPLCSYSTAKRTGFLVHINYTHLKKFGYVCDTCGKGFNDIILYKEHNNEHLGIKPFSCIVCSKSFTFSRYLFTHQIRSHRVGIEGQLLPNQCSVCNKVFSKSVTLQKHVQDRHIKNNLPHLKKHLCDTCGKGFAQKNKLRVHCRVHTGIKPYTCSYCAKSFTKKDYLVMHERVHSGEKPYSCKFCGKCFSQGAPLRIHIRTHTGERPYICQFCTAGFTSRGALNMHCKNCTGYI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -