Chae015119.1
Basic Information
- Insect
- Chrysolina haemoptera
- Gene Symbol
- -
- Assembly
- GCA_958298965.1
- Location
- OY282587.1:9109751-9115322[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.34 53 6.3 0.2 1 23 67 89 67 89 0.94 2 17 6.1 9.4e+02 2.3 2.1 1 21 124 144 124 146 0.80 3 17 0.0096 1.5 11.2 4.0 1 23 152 175 152 175 0.97 4 17 0.0012 0.18 14.0 1.4 3 23 187 208 185 208 0.94 5 17 0.0072 1.1 11.6 0.7 3 23 218 238 217 238 0.98 6 17 7.7e-05 0.012 17.7 3.0 1 23 244 266 244 266 0.96 7 17 0.00027 0.041 16.1 0.1 1 23 272 294 272 294 0.93 8 17 0.53 81 5.7 0.1 1 14 300 313 300 317 0.87 9 17 0.45 69 5.9 0.8 2 23 444 465 443 465 0.94 10 17 0.55 84 5.6 3.2 1 23 471 493 471 493 0.97 11 17 0.0079 1.2 11.4 2.5 1 23 499 521 499 521 0.92 12 17 0.0027 0.41 12.9 6.0 1 23 527 550 527 550 0.98 13 17 0.00093 0.14 14.3 3.7 1 23 562 585 562 585 0.93 14 17 0.0025 0.38 13.0 1.9 3 23 596 616 595 616 0.99 15 17 7.6e-07 0.00012 24.1 1.2 1 23 622 644 622 644 0.98 16 17 2.8e-07 4.3e-05 25.4 1.2 1 23 650 672 650 672 0.99 17 17 0.0012 0.18 14.0 0.4 1 22 678 699 678 699 0.96
Sequence Information
- Coding Sequence
- atgaaaatttcgaaagaaaaACCTCAAATAAAAGTTGAAGTAGACACAGAAATCGTTGCGAGATCGAGAATCAAAAGGGAACTTGACCCAGACTTCGTcccgaaaaagaaaaaatctaaatcaAAGCCAAAGTCCCCCAAATCAAGAGAAACGCCCAAAGAAGAAAACTACCAAGACATCGGAGAGAACCTCTTGAAATTCGCCTGCGAGATATGCGACGAAAAAATCGATTCAAGCATCGCATTTGCTCATCATTCAATCCGTCATTCTCAAGATAACAAATACCACTGTCACTACTGCACCTACAAGAGCACATTGCTGAAGAGGATCAACAAACACATGAAGTTCCATGGGAACATGGGCAAGTATTTCCAGTGCGAAACATGCCAGGCAGTGTTTCCCGAGTGTATCCAGGCCATCGAACACAAGCACTTCCACACGGGAGAAATGTCCTACCGTTGCGAACTCTGCAATAAGCACTTCATGTTTTCCTGGTTGTTGTCCACCCACAAGAGACTATTCCACCCATCGATGAAGGACGATCCCTCCAGTCTGTTTTGCGACAGTTGCAATATGTCTTTCGGCACTCGCTCGGGTTTGCGGAAGCACATTTTCCGCAAGCACAGCAGAATACCGAAGGAACAACCGCTGTGTGACGTCTGCGGCAAAACACTGGCAAGCAACGAGACTCTAAAGTTCCACAAGAGGACGCATACAGGCGAAAAACCGCATGCCTGTGCCACTTGCGGCAAGTGCTTCAGGAAAAAAGGGCTTCTGGTGGAGCACGAGCGTACACATACCGGGGAAAAACCTTTTGCGTGCATTTATTGTGATAAGGCTTTCGCCCAGAGGGCACCTCTGAAAATCCACCAAAGAATCCATACCGGCGAAAGGCCGTATATTTGTAGGTTATGTGGGAAAGGGTTTTTCGACGCCTCAATTCTGAATAAGCTGTTATACGGCCCCGGACTTTCAATAACCCCCGTGAAACAAGAACAATTCGATTGCAGCTTCACACCTAACAACTTTAACGCAGCTAGTCCAAATACCTTCAATAACTTCAACTCTTTCAACGGGTACAGCGGAGCGATGGCCGCCTTCTTCAATTCATTACCCCATCAACCCAAACAAAATAACTCCATACTGAAAGATCCCATTGCTGTATCCAATATTCCAATAGTCCCAGAGTTTGTTAATATTTCAGCACCGGCCCCAGATAAGAACATAATCGAATGTTTGAAAACGCAAAAAAAGAAGAGGAAAGAGAAGCAGAAGAGCGTGGAGCGAACCCAGCCTCCTGTTCCACCCGTTGAGCTGGATGAACCAATACACTGCGATTCTTGCAACGTCACTTATAAAAACAATGTCGCCTTCGCCTTGCATTCTGAGAAGCACAGCGAGGACGGAAAGTACACCTGTCACCTGTGTGATTTCAAGAACGCATCCAGGTACCACATAGAGATGCACATTCGCGCCCACGAAGGTACCACCAAGTACAAGTGCGAAATTTGCAGCAAAGCCTTCACCGTTAGTACTCACGCAAACGAGCATAAGTACTTTCACACCGGGGAAAAACCCTTTGAGTGCGACATTTGCCACAAGCACTTCATGTTCTCGTGGTTCTTGACCTCCCACAGGCGTACCCAGCACTGGGAGCAGGTCACGGGGAGTCCGCTGGTGAAGTACGACTGTACCATCTGCAAGAAACACTACACGTCTTCAACTGGTTTGAAGAGGCATAACCTGAGCAAGCACAATGCTACAGGGGTGGATGCCTCGGTGCTTTGCGACATCTGCGGTAAAAGGTTGTCCAGCAAGgaaaaactgaaattccacAGGCGTACCCACACGGGGTACAAGCCGTTTTCTTGCGACGTTTGCACCAAGAGTTTTTCGAGGAAGGAACAGCTGAAGGAGCACGAACGGGTGCATACCGGAGAGAAACCCTACAAATGTCAGTACTGCGGAAAGGGTTTCACTCAGAGGAGTCCCTTGAGGATACACGAGCGCACTCATACTGGGGAGCGACCGTACGTCTGTAAGATTTGTCATAAGGGGTTCATTTCCAAAGGGGTGATGGATACTCATATGAAGACTTGTTCGGGTAACATACAAGATGATGATTTGTATTAG
- Protein Sequence
- MKISKEKPQIKVEVDTEIVARSRIKRELDPDFVPKKKKSKSKPKSPKSRETPKEENYQDIGENLLKFACEICDEKIDSSIAFAHHSIRHSQDNKYHCHYCTYKSTLLKRINKHMKFHGNMGKYFQCETCQAVFPECIQAIEHKHFHTGEMSYRCELCNKHFMFSWLLSTHKRLFHPSMKDDPSSLFCDSCNMSFGTRSGLRKHIFRKHSRIPKEQPLCDVCGKTLASNETLKFHKRTHTGEKPHACATCGKCFRKKGLLVEHERTHTGEKPFACIYCDKAFAQRAPLKIHQRIHTGERPYICRLCGKGFFDASILNKLLYGPGLSITPVKQEQFDCSFTPNNFNAASPNTFNNFNSFNGYSGAMAAFFNSLPHQPKQNNSILKDPIAVSNIPIVPEFVNISAPAPDKNIIECLKTQKKKRKEKQKSVERTQPPVPPVELDEPIHCDSCNVTYKNNVAFALHSEKHSEDGKYTCHLCDFKNASRYHIEMHIRAHEGTTKYKCEICSKAFTVSTHANEHKYFHTGEKPFECDICHKHFMFSWFLTSHRRTQHWEQVTGSPLVKYDCTICKKHYTSSTGLKRHNLSKHNATGVDASVLCDICGKRLSSKEKLKFHRRTHTGYKPFSCDVCTKSFSRKEQLKEHERVHTGEKPYKCQYCGKGFTQRSPLRIHERTHTGERPYVCKICHKGFISKGVMDTHMKTCSGNIQDDDLY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -