Basic Information

Insect: Chrysolina haemoptera
Gene Symbol: -
Assembly: GCA_958298965.1
Location: OY282587.1:11979724-11989941[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 9.8e-06 0.0015 20.6 1.7 2 23 21 42 21 42 0.98

2 16 0.0003 0.045 15.9 0.3 3 23 46 67 45 67 0.95

3 16 0.97 1.5e+02 4.9 0.5 1 23 73 97 73 97 0.95

4 16 1.7e-05 0.0026 19.8 0.9 1 21 105 125 105 126 0.94

5 16 0.00075 0.12 14.6 0.4 1 23 134 156 134 156 0.98

6 16 0.067 10 8.5 1.1 1 23 162 184 162 184 0.97

7 16 5.5e-06 0.00084 21.4 2.1 1 23 190 212 190 212 0.98

8 16 0.00041 0.063 15.5 2.6 1 23 218 240 218 240 0.99

9 16 0.00036 0.055 15.6 2.0 3 23 461 481 459 481 0.96

10 16 0.37 56 6.2 4.6 1 23 494 517 494 517 0.96

11 16 0.018 2.8 10.3 2.7 3 23 523 545 521 545 0.94

12 16 4.4e-05 0.0068 18.5 0.3 1 20 555 574 555 576 0.93

13 16 0.00024 0.037 16.2 8.4 1 23 584 606 584 606 0.99

14 16 0.0024 0.36 13.1 2.6 2 23 613 634 612 634 0.96

15 16 0.04 6.1 9.2 0.4 1 23 640 662 640 662 0.94

16 16 1.3 2e+02 4.5 3.8 1 23 668 690 668 690 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	9.8e-06	0.0015	20.6	1.7	2	23	21	42	21	42	0.98
2	16	0.0003	0.045	15.9	0.3	3	23	46	67	45	67	0.95
3	16	0.97	1.5e+02	4.9	0.5	1	23	73	97	73	97	0.95
4	16	1.7e-05	0.0026	19.8	0.9	1	21	105	125	105	126	0.94
5	16	0.00075	0.12	14.6	0.4	1	23	134	156	134	156	0.98
6	16	0.067	10	8.5	1.1	1	23	162	184	162	184	0.97
7	16	5.5e-06	0.00084	21.4	2.1	1	23	190	212	190	212	0.98
8	16	0.00041	0.063	15.5	2.6	1	23	218	240	218	240	0.99
9	16	0.00036	0.055	15.6	2.0	3	23	461	481	459	481	0.96
10	16	0.37	56	6.2	4.6	1	23	494	517	494	517	0.96
11	16	0.018	2.8	10.3	2.7	3	23	523	545	521	545	0.94
12	16	4.4e-05	0.0068	18.5	0.3	1	20	555	574	555	576	0.93
13	16	0.00024	0.037	16.2	8.4	1	23	584	606	584	606	0.99
14	16	0.0024	0.36	13.1	2.6	2	23	613	634	612	634	0.96
15	16	0.04	6.1	9.2	0.4	1	23	640	662	640	662	0.94
16	16	1.3	2e+02	4.5	3.8	1	23	668	690	668	690	0.96

Sequence Information

Coding Sequence: ATGAGGATATCAAGTGAGTTTATTCAATTCTATCAAATATGCATTGATGAGCAGCAGGAAACATGTCCAACAtgcaagaaaaaattcaaaacactgGGATTACttgaaaaacatgtaaaaacCCACAATCCTATATGTGATGAATGTAGTAAAAGTTTTGAGAGTGTCAGCTTACTTCGATTGCATATCAAAGGAAAACATCCTAAGGTTAAAGAATACAAATGCAGACTTTGCCCTAACTTCTCCTTCATCACAGAAAAGGAATATTTGTTGCATGTTCGTGAAGATCACGAAGGAAAAATCATAGAATGTCACATGTGTAGTTCTTGTGGAAAAACCTTTAGAACGAGTTCCGAGCTATCATTGCACATCAAGTCAAAATGCGGAAccgaaaaaaactttatttgtaAAGAATGTGGACAGAGACTAATGTCTCCAGGATCTTTATACACCCATTTAAAGAGACATAAAGGAGAAATAACATTTATGTGCAGATTCTGTGCCAAACTCTTCCTTACCTCGGGACAGTTGAAGATTCATGAAAGaacacatacaaaacaaaaGGTTTTTGTTTGTGATgaTTGTGGCAAAGGTTTTTGTCATCGCCAGAGTTTGATAACTCACATTTCAGTACACACTGGTGTCAAGCCCTACCAGTGCGAGAGCTGTGGCAGGTCATTCAGCTGTGTGGGAAATCTGCTGAAGCACAGAAGATCTCATATAGATACCTGTGGATCAATACCAGTGACAAGTCATAGAGTTCAGAATCCTTCTACAAAAATTAAGGTGAAGATCAATACACCTGCCTCTTCTAAGTTGAAAAGGGCTCAAATGAAAGAAGAAATGGAAAGAAAGTTTGCTATGTTGGACCAGGAAATTGAGAAAATTGGAAAGGGCATTGATGCAAATGTTACAGTTGATAATACAAAGGATCTTGAGAATACTGAACCTCCGAAGAAGACTGAGCCTCCAGGGAAGACTAAGCCTTCAGAGAAGACTGAGCAACCGGAGAGGACTGAGCCACCGGAGAGGACTGCGTCACCGGAGAGGACTGCGTCACCGGAGAGGACTGAGTCACCGCAGAAGACTGTGCCACCGGAAAAGTTTCAAGTATCAGAGAATACTGATCTACCAGGGGAGATAGTAGAATTAGATGTCACCAATAAAGATCCGACCTTTTTGGAAAAGGCCACTACTGATTGCAGCCACAGAGAGAGTGATTTTGATAAACATGCTCCAGATAAAAACAGTGATATCcgcatatttattcaaaaaccatctttaaaaaaaaagtttctgaaAAGAAAGGGAGGCAGTGAGCTCAAAGAGGTGGACAATTTTGCAAGAGAACAAAGAGTTGATCGAGGTGATTTTAcaaattgtaaatattgtaaTAAAGGATACAACAATTCTAGATTGTTGTTCAAGCATGAACAGATGCATAAGGATAATGAACATGAAGGCTATAGACAATTTCCACACAAGTGTAGCTGTTGCAAAATGACTTTTGAAACGAAACAAGAAGTCAAGGATCATCAACAAATTGCCCACGTGGACATACTAGcttGCCATGACTGCGGcgacaaaatgttttcaaaggTGGATTCTCTCAAGTTACACCAGCAACATTTCCATAAAGGAATTCCACGCAAGACATTCACCTACATCTGTGACAAATGCGGTAAAGGTTTCAAACAAAAAGTCCTCTTAACAACTCATGAGAGTACCAATTGCGGTACGATTTCACAATTCCAGTGTAATATCTGCCACAAACAATTCTCGACTCATCACACTCAAAAGGCCCATATGCGTATCCATAATTCAGAGAAGAAATTGTCTTGTAAGTTTTGTGGTAAGACCTTTCATTGGAAGGGGCAGCTCAAGGTTCATGAAAGAtctcacactggtgaaaaaccatacACCTGTCTTTTCTGTCCGAGTGCTTTTGCATATCGAGACAGTTTGATAACACATAGTACCCTGCATACAGGAATAAAACCCTATTCATGTAAATGTTGTGGGTGGAGATTTTCGTGCATAGGAAATCTTGCAAAACACAAAGGTACACATGCTAGTACCTGTGGGACTTGGTACAGAGAAAACGAGGAAGATGGATTAATTGAATAG
Protein Sequence: MRISSEFIQFYQICIDEQQETCPTCKKKFKTLGLLEKHVKTHNPICDECSKSFESVSLLRLHIKGKHPKVKEYKCRLCPNFSFITEKEYLLHVREDHEGKIIECHMCSSCGKTFRTSSELSLHIKSKCGTEKNFICKECGQRLMSPGSLYTHLKRHKGEITFMCRFCAKLFLTSGQLKIHERTHTKQKVFVCDDCGKGFCHRQSLITHISVHTGVKPYQCESCGRSFSCVGNLLKHRRSHIDTCGSIPVTSHRVQNPSTKIKVKINTPASSKLKRAQMKEEMERKFAMLDQEIEKIGKGIDANVTVDNTKDLENTEPPKKTEPPGKTKPSEKTEQPERTEPPERTASPERTASPERTESPQKTVPPEKFQVSENTDLPGEIVELDVTNKDPTFLEKATTDCSHRESDFDKHAPDKNSDIRIFIQKPSLKKKFLKRKGGSELKEVDNFAREQRVDRGDFTNCKYCNKGYNNSRLLFKHEQMHKDNEHEGYRQFPHKCSCCKMTFETKQEVKDHQQIAHVDILACHDCGDKMFSKVDSLKLHQQHFHKGIPRKTFTYICDKCGKGFKQKVLLTTHESTNCGTISQFQCNICHKQFSTHHTQKAHMRIHNSEKKLSCKFCGKTFHWKGQLKVHERSHTGEKPYTCLFCPSAFAYRDSLITHSTLHTGIKPYSCKCCGWRFSCIGNLAKHKGTHASTCGTWYRENEEDGLIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -