Basic Information

Insect: Chrysolina haemoptera
Gene Symbol: -
Assembly: GCA_958298965.1
Location: OY282595.1:619430-629261[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 3.1e-05 0.0048 19.0 1.1 1 23 163 185 163 185 0.98

2 9 2.5e-05 0.0038 19.3 3.3 1 23 191 213 191 213 0.99

3 9 2e-06 0.00031 22.7 4.2 1 23 219 241 219 241 0.98

4 9 0.00035 0.054 15.7 0.6 1 23 247 269 247 269 0.98

5 9 2.6e-06 0.0004 22.4 1.0 1 23 275 297 275 297 0.98

6 9 1.9e-07 2.9e-05 26.0 0.8 2 23 304 325 303 325 0.97

7 9 1.6e-06 0.00025 23.0 1.7 1 23 331 353 331 353 0.99

8 9 0.00078 0.12 14.6 2.1 1 23 359 381 359 381 0.97

9 9 3.4e-06 0.00053 22.0 4.1 1 23 386 408 386 408 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	3.1e-05	0.0048	19.0	1.1	1	23	163	185	163	185	0.98
2	9	2.5e-05	0.0038	19.3	3.3	1	23	191	213	191	213	0.99
3	9	2e-06	0.00031	22.7	4.2	1	23	219	241	219	241	0.98
4	9	0.00035	0.054	15.7	0.6	1	23	247	269	247	269	0.98
5	9	2.6e-06	0.0004	22.4	1.0	1	23	275	297	275	297	0.98
6	9	1.9e-07	2.9e-05	26.0	0.8	2	23	304	325	303	325	0.97
7	9	1.6e-06	0.00025	23.0	1.7	1	23	331	353	331	353	0.99
8	9	0.00078	0.12	14.6	2.1	1	23	359	381	359	381	0.97
9	9	3.4e-06	0.00053	22.0	4.1	1	23	386	408	386	408	0.98

Sequence Information

Coding Sequence: ATGAACATTTCGAAAAGCCGATTCCGCTTTACGGAAGAATTTTTGGCAAGGGAGGTATATGGTCAAAATCCCTATCAAGATCCACAGAGATGGACTCTAATCCAGATTAACATGATCCAAATCACAGGAAAAAGTATCAGCATTAGAACTCTTAGAGAGAGGATACAAAATTTAGTGAAGAAATATTCAGTTAAGGCTGAATACTTGAAAGGAAAGTTCAAAAGTTGCGCAATGGAAGAGAAAGATTTCACCAATATTTCTGGTGATTTGTCATTGGAAACCGTTCACTGTAAAATAGAGATAGACAATGGTGCTGAACCTGTGTACGTAGATGTTAAACCTGATATTTTCAAAGCAGAGCCAAGTGAAtatgacccatttgaaaatcctGGCCGAGAAAATGAGGAGTGTCCTGAAGTCATAAAATCCTGCTCTTCTGGCAAACTTGCAACAGTGAAGCATGAAAAAGGTCATTCAAGTAAACCTTTCAATTGCAAACTCTGCTTGAAATCTTATGTTTATAGTTCAAATTTGCAAGAACATCTAAAGGTGCATACAGGAGAAAAACGGTTCAAATGTGAGATGTGTCCGAAGTCATTTATGTTCACTTCTCATTTGAGTATGCATCAAAGAGTTCATACTAAAGAAAAACCGTACAAGTGCAAAGTCTGTTCAAAATCATTTTCTCTCAAATCTCATTTGAAAAGGCATGAAATGATACACACAGGGGAAAAACCGTTCAAGTGCCAAGTCTGTTCTAAAACATTTTACGGGATTTCACCTTTAAAAAGGCACGAAATGATTCATACAGGAGAGAAACCGTTCAAGTGCTCAGTTTGTTCGAAGTCTTTCACTCAGAGTAACCAGTTATTGGCACACGAGAAAGTTCACACTTTGGATAAAACTACCAAATGTGAAGTGTGCTACAAATCATTTTCTTCTCCGTCTAATTTGATGAGTCATCAAAGGGTTCATTCTGGAGAACGTCCGTTCAAGTGCGAGACATGCCCTAAGGCATTTTTTACCTCTTCTCATTTGGCGATACATCAAAAgattcatactggagaaaaaccacATGTTTGCAAATTCTGTTTGCAATCGTATGCCTCTAGTTCTAACCTGCTAAAACACGAAAATTCTCACgcaaataaatcttttcattgCCAATTCTGTGGGAAATCTTTTgccaaaaatagctatttagaGAAGCACGAGAGAACTCacaatggaaaaataaataatgctgACTCTAATAGAGAACTCTCACATTCAGAGTTCATAGTGTGCAATGAAGCGCCGTCAGCTATCGTGACCCTAGAACAGAACACAAGGAACGAAGAAAACAGAGGTTTCGTAAAGGGTGAAGACATGGATGAATTCATTCCGAGTGATAATATGAAAGAGCTGAGAGATGAGACCGGAGAGTTACCACCCAAcgaagacacaaaacacttcattATGAATAGGATTCTAGATATTCAAGTGAGCGAAATCACAGacacatttttatttaataaagacACAAAGGAATTTGTACCTAATGAAAACACGGTAAATATCATACTGAGTGATGATACACAAGAGTTTATAAAGAGTGATCATACATCCAGCAAAGATACGAATGAGTTCATGGGTGAAATTAAAAAAGAGTTCACTGTGAGCGAAGATATGGAAGAATTTATTCCAAATGACGACATGTAA
Protein Sequence: MNISKSRFRFTEEFLAREVYGQNPYQDPQRWTLIQINMIQITGKSISIRTLRERIQNLVKKYSVKAEYLKGKFKSCAMEEKDFTNISGDLSLETVHCKIEIDNGAEPVYVDVKPDIFKAEPSEYDPFENPGRENEECPEVIKSCSSGKLATVKHEKGHSSKPFNCKLCLKSYVYSSNLQEHLKVHTGEKRFKCEMCPKSFMFTSHLSMHQRVHTKEKPYKCKVCSKSFSLKSHLKRHEMIHTGEKPFKCQVCSKTFYGISPLKRHEMIHTGEKPFKCSVCSKSFTQSNQLLAHEKVHTLDKTTKCEVCYKSFSSPSNLMSHQRVHSGERPFKCETCPKAFFTSSHLAIHQKIHTGEKPHVCKFCLQSYASSSNLLKHENSHANKSFHCQFCGKSFAKNSYLEKHERTHNGKINNADSNRELSHSEFIVCNEAPSAIVTLEQNTRNEENRGFVKGEDMDEFIPSDNMKELRDETGELPPNEDTKHFIMNRILDIQVSEITDTFLFNKDTKEFVPNENTVNIILSDDTQEFIKSDHTSSKDTNEFMGEIKKEFTVSEDMEEFIPNDDM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -