Chae040841.1
Basic Information
- Insect
- Chrysolina haemoptera
- Gene Symbol
- -
- Assembly
- GCA_958298965.1
- Location
- OY282595.1:22851069-22864633[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.48 74 5.8 1.8 6 21 13 28 7 29 0.86 2 14 2.9 4.5e+02 3.3 0.0 3 20 36 53 35 55 0.93 3 14 0.12 19 7.7 4.4 1 20 257 276 257 278 0.94 4 14 8.2e-05 0.013 17.7 1.3 2 23 287 308 286 308 0.97 5 14 7e-05 0.011 17.9 2.8 1 23 326 348 326 348 0.98 6 14 0.52 80 5.7 0.5 1 23 379 400 379 400 0.93 7 14 4.1e-05 0.0063 18.6 0.8 1 23 406 428 406 428 0.96 8 14 0.00013 0.021 17.0 0.3 1 21 434 454 434 455 0.93 9 14 2.4e-05 0.0036 19.4 2.3 1 23 462 484 462 484 0.98 10 14 1.1e-05 0.0017 20.4 3.3 1 23 490 512 490 512 0.98 11 14 0.00013 0.02 17.0 8.0 1 23 518 540 518 540 0.99 12 14 5.5e-06 0.00084 21.4 0.8 1 23 546 568 546 568 0.98 13 14 3e-05 0.0046 19.0 0.1 1 23 572 594 572 594 0.98 14 14 0.00043 0.065 15.4 0.1 1 23 602 625 602 625 0.96
Sequence Information
- Coding Sequence
- ATGGATGCCTCGCTGTCGTTGATTTGCCCTCTATGTTGTGAGGAGAAGTTTTCTTCCCATCATTCTTTAAAATACCATATTTTGAGCATAATTGATAACTTGTTGTGCCCTGCATGCAACATGAGATTTGATGACATTTTAAACTTGGTAGAACATTTGGGAAGAGAATGTAaagaaaatgaaatggatacCATTTCACATCCAGTATCTaccgaaaatataaaaaaggaaaCTTATGTGGAACCCTCAAGTACTTTGATTTGTAAAGATGCAGATGATCCACAAACCATTGAGGTTGCCCCCGAATTAGAATTGTTGGAAGGTGAAAAAAACAAGTCTGTAATTAATGAAGATGAGGAGAGCGTTATGTACATGTGTGTAATGTGTGAAGTTCATTTTACTTGCATTGACGAACATTTACAAAAGTTCCACGATGGGGAGGAAGTTGTATTGgaaactgaagaaactgaaaatgATGGATATGAATTGGAAAGTGAATCAGTAATAAGATCGGAGAGGGAAATAGGTGAGGAACCTATGGACGACAATGAGTATGTTAGTTCAAATAATATTGATGAACAACAATGTCTTGACAAAGATGGTCGAGCGTTCACTAGGAAAGTTGTTAGAATTGGTAAATTCTGGGATGACGAAAATACTATTAAAAGTCCCATGACGGAAAATTATATGTTCGAAAACGGACAAGTTAGAAAAGTTACAGAAGAAGAAGCTGAACAAATTGAGGACAAGAATTCACTAATCCAAATTCACCAATGTCCAAAGTGTTCCCTACAATTTCCCAAGCTATATCACTTTTTGAAACATGTGTGTGATCCTAACAAAATCAACCATAAACTCAAATGCAGTCACTGCCCTTTAGTATTCCCCAATTACCAGTCTCTGAAGGGACATATGAAGTCtcatttattgaatgaaaatggTGAAACGGTAACCAAAGTGGTTACTCTAGGACCACATACCTGTGATATTTGTAACACAATGTTTCCATCTTTCAAAAGTCTTCGATTGCATCAAAGAATGCATGTTCCAGTGAAAAGCAAAGCTCCTGATGCTCCAGTCAGTTATAGCTCAACAGGTGTTGAAGATGGTTCTGAAGGAGTAGTTCGTCAGATGTTCGTTTGCAGTATATGTAATAATACATATGATAAAGAATATGAAGAAGTTCATATGAAATCTCATGATCAGGAAAGTCATTTTGACTGTACTATTTGTAATCGCAAGTTTTACTCAAAGGAAAATTTAGAAATGCATGCGAAAGCTCATaccaatacaaaaaaatttacgTGCTCCTATTGCAAAAGACCTTTCTCTACTAATAATGCATTAGAAGAACATGTTACAACTTTTTGTCAACAAAGACAATACGAGTGTCAGTACTGTGGAAGACGATTTTCTAGACCACATGAGAAGGTAAAACACGAAAGAAtacatactggagaaaaaccacACGTATGTCAAGTTTGTGGAAAAGCTTTCCGGGTAAGTTATTGTCTAACTCTTCATTTAAGAACACATTCTGGTACAAGACCATATCAGTGTGATCATTGTGGCAAGAGATTCAAATCACATAGTGTCTATAACCATCATCTGCTAACCCACTCAAATGTGAGAGCTTACAAATGTACTTACTGTCCCAAGGCATTCAAAACCAGTGTGCAATTAGCAGGTCATAAAAATAGTCACACAAAACCATTTCCTTGTACAGAATGTAATCGTCCTTTTGCTTCACTGTATGCAGTTAGGGCCCATATGGAAACTCACAAAAGAGAAAACAATCTAAAATTTGACTGTTGGTTGTGCGGGGCAACATATGCAAGAGCATTTGCTCTGAGGGATCATATGAAGAACCAGCATGCTGATGAAATGAACGATAATACCATAAATGATCCAGGTTATGTTGAAACTCAGGAGAGTACttctcaaattgaaaatgaaatggtTGCTGAAGATGAGGAACAAATACAATCAGAAGACAAtgtgtga
- Protein Sequence
- MDASLSLICPLCCEEKFSSHHSLKYHILSIIDNLLCPACNMRFDDILNLVEHLGRECKENEMDTISHPVSTENIKKETYVEPSSTLICKDADDPQTIEVAPELELLEGEKNKSVINEDEESVMYMCVMCEVHFTCIDEHLQKFHDGEEVVLETEETENDGYELESESVIRSEREIGEEPMDDNEYVSSNNIDEQQCLDKDGRAFTRKVVRIGKFWDDENTIKSPMTENYMFENGQVRKVTEEEAEQIEDKNSLIQIHQCPKCSLQFPKLYHFLKHVCDPNKINHKLKCSHCPLVFPNYQSLKGHMKSHLLNENGETVTKVVTLGPHTCDICNTMFPSFKSLRLHQRMHVPVKSKAPDAPVSYSSTGVEDGSEGVVRQMFVCSICNNTYDKEYEEVHMKSHDQESHFDCTICNRKFYSKENLEMHAKAHTNTKKFTCSYCKRPFSTNNALEEHVTTFCQQRQYECQYCGRRFSRPHEKVKHERIHTGEKPHVCQVCGKAFRVSYCLTLHLRTHSGTRPYQCDHCGKRFKSHSVYNHHLLTHSNVRAYKCTYCPKAFKTSVQLAGHKNSHTKPFPCTECNRPFASLYAVRAHMETHKRENNLKFDCWLCGATYARAFALRDHMKNQHADEMNDNTINDPGYVETQESTSQIENEMVAEDEEQIQSEDNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00328501;
- 90% Identity
- iTF_00328501;
- 80% Identity
- -